Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:128533518-130003667

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41950 1 128542355 to 128549406 7051 + lncRNA gene predicted gene, 41950
D1Mit99 1 128551085 to 128551281 196 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 99
D1Mit286 1 128551097 to 128551241 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 286
Tssr13460 1 128561618 to 128561621 3 - TSS region transcription start site region 13460
Tssr194 1 128570052 to 128570061 9 - TSS region transcription start site region 194
Tssr8535 1 128570564 to 128570607 43 + TSS region transcription start site region 8535
Tssr195 1 128586917 to 128586941 24 - TSS region transcription start site region 195
Cxcr4 1 128588199 to 128592293 4094 - protein coding gene chemokine (C-X-C motif) receptor 4
Tssr13461 1 128588418 to 128588462 44 - TSS region transcription start site region 13461
Tssr13462 1 128588604 to 128588632 28 - TSS region transcription start site region 13462
Tssr13463 1 128588700 to 128588732 32 - TSS region transcription start site region 13463
Tssr13464 1 128588757 to 128588774 17 - TSS region transcription start site region 13464
Tssr13465 1 128588775 to 128588787 12 - TSS region transcription start site region 13465
Tssr13466 1 128588840 to 128588858 18 - TSS region transcription start site region 13466
Tssr13467 1 128588887 to 128588900 13 - TSS region transcription start site region 13467
Tssr13468 1 128588976 to 128588986 10 - TSS region transcription start site region 13468
Tssr13469 1 128589029 to 128589040 11 - TSS region transcription start site region 13469
Tssr13470 1 128589124 to 128589130 6 - TSS region transcription start site region 13470
Tssr13471 1 128589193 to 128589202 9 - TSS region transcription start site region 13471
Tssr13472 1 128589262 to 128589270 8 - TSS region transcription start site region 13472
Tssr13473 1 128589275 to 128589285 10 - TSS region transcription start site region 13473
Tssr13474 1 128589331 to 128589346 15 - TSS region transcription start site region 13474
Tssr13475 1 128589355 to 128589367 12 - TSS region transcription start site region 13475
Tssr13476 1 128589372 to 128589379 7 - TSS region transcription start site region 13476
Tssr13477 1 128589433 to 128589445 12 - TSS region transcription start site region 13477
Cpgi697 1 128590784 to 128592520 1736 CpG island CpG island 697
Tssr13478 1 128590816 to 128590833 17 - TSS region transcription start site region 13478
Tssr13479 1 128590845 to 128590894 49 - TSS region transcription start site region 13479
Tssr8536 1 128590954 to 128590999 45 + TSS region transcription start site region 8536
Tssr13480 1 128591167 to 128591183 16 - TSS region transcription start site region 13480
Tssr8537 1 128591277 to 128591290 13 + TSS region transcription start site region 8537
Tssr8538 1 128591305 to 128591316 11 + TSS region transcription start site region 8538
Tssr8539 1 128591319 to 128591361 42 + TSS region transcription start site region 8539
Tssr196 1 128592236 to 128592262 26 - TSS region transcription start site region 196
Tssr13481 1 128592284 to 128592307 23 - TSS region transcription start site region 13481
Tssr8540 1 128592445 to 128592458 13 + TSS region transcription start site region 8540
Cpgi698 1 128593124 to 128593338 214 CpG island CpG island 698
Tssr13482 1 128607974 to 128607986 12 - TSS region transcription start site region 13482
Tssr8541 1 128612806 to 128612843 37 + TSS region transcription start site region 8541
Tssr13483 1 128614870 to 128614881 11 - TSS region transcription start site region 13483
Tssr8542 1 128705429 to 128705442 13 + TSS region transcription start site region 8542
Tssr8543 1 128705468 to 128705493 25 + TSS region transcription start site region 8543
Tssr8544 1 128705743 to 128705758 15 + TSS region transcription start site region 8544
Tssr13484 1 128712835 to 128712846 11 - TSS region transcription start site region 13484
Tssr13485 1 128712847 to 128712865 18 - TSS region transcription start site region 13485
Tssr197 1 128712970 to 128712994 24 - TSS region transcription start site region 197
Tssr8545 1 128713189 to 128713198 9 + TSS region transcription start site region 8545
Tssr13486 1 128730043 to 128730069 26 - TSS region transcription start site region 13486
Tssr13487 1 128747538 to 128747551 13 - TSS region transcription start site region 13487
Tssr8546 1 128747680 to 128747700 20 + TSS region transcription start site region 8546
Gm29599 1 128750926 to 128751347 421 + pseudogene predicted gene 29599
Tssr13488 1 128766891 to 128766895 4 - TSS region transcription start site region 13488
Tssr198 1 128767188 to 128767195 7 + TSS region transcription start site region 198
Gm26686 1 128770599 to 128774421 3822 - lincRNA gene predicted gene, 26686
Tssr8547 1 128787549 to 128787581 32 + TSS region transcription start site region 8547
D1Mit344 1 128842889 to 128843026 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 344
D1Mit344.1 1 128843022 to 128843132 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 344.1
Gm23056 1 128885909 to 128886019 110 - snRNA gene predicted gene, 23056
D1Mit263 1 129000970 to 129001101 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 263
D1Mit1001 1 129047558 to 129047688 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1001
Sbw1 1 129203268 to 129203348 80 QTL splenomegaly-NZB x NZW 1
D1Nds1 1 129203268 to 129203348 80 DNA segment DNA segment, Chr 1, Nuffield Department of Surgery 1
D1Mit262 1 129268518 to 129268667 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 262
D1Mit262.1 1 129268628 to 129268761 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 262.1
Cpgi699 1 129273117 to 129273820 703 CpG island CpG island 699
Thsd7b 1 129273304 to 130219278 945974 + protein coding gene thrombospondin, type I, domain containing 7B
Tssr8548 1 129273436 to 129273470 34 + TSS region transcription start site region 8548
Tssr8549 1 129273471 to 129273482 11 + TSS region transcription start site region 8549
Tssr8550 1 129273491 to 129273498 7 + TSS region transcription start site region 8550
Gm38240 1 129283107 to 129285593 2486 + unclassified gene predicted gene, 38240
Gm38330 1 129372304 to 129373262 958 + unclassified gene predicted gene, 38330
Tssr13489 1 129550314 to 129550340 26 - TSS region transcription start site region 13489
Cpgi700 1 129595479 to 129595663 184 CpG island CpG island 700
Gm36347 1 129608725 to 129616189 7464 - lncRNA gene predicted gene, 36347
Tssr13490 1 129616192 to 129616246 54 - TSS region transcription start site region 13490
Tssr13491 1 129680638 to 129680643 5 - TSS region transcription start site region 13491
Tssr13492 1 129680686 to 129680711 25 - TSS region transcription start site region 13492
Tssr8551 1 129680996 to 129681007 11 + TSS region transcription start site region 8551
Gm36951 1 129710543 to 129713229 2686 + unclassified gene predicted gene, 36951
D1Mit229 1 129747076 to 129747214 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 229
Gm15790 1 129796608 to 129797858 1250 - pseudogene predicted pseudogene 15790
Rpl31-ps9 1 129801387 to 129801764 377 - pseudogene ribosomal protein L31, pseudogene 9
Gm37479 1 129833148 to 129836988 3840 + unclassified gene predicted gene, 37479
Gm37064 1 129860815 to 129863045 2230 + unclassified gene predicted gene, 37064
Gm37278 1 129943162 to 129946033 2871 + unclassified gene predicted gene, 37278