Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:128445980-131946388

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443 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr13459 1 128447272 to 128447284 12 - TSS region transcription start site region 13459
Cpgi696 1 128472492 to 128472668 176 CpG island CpG island 696
Gm23902 1 128490040 to 128490173 133 + snoRNA gene predicted gene, 23902
Gm29598 1 128493845 to 128494432 587 - pseudogene predicted gene 29598
Gm29597 1 128514810 to 128515117 307 - pseudogene predicted gene 29597
Gm25384 1 128515115 to 128515219 104 - snRNA gene predicted gene, 25384
Gm6170 1 128520073 to 128521460 1387 - pseudogene predicted gene 6170
Gm41950 1 128542355 to 128549406 7051 + lncRNA gene predicted gene, 41950
D1Mit99 1 128551085 to 128551281 196 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 99
D1Mit286 1 128551097 to 128551241 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 286
Tssr13460 1 128561618 to 128561621 3 - TSS region transcription start site region 13460
Tssr194 1 128570052 to 128570061 9 - TSS region transcription start site region 194
Tssr8535 1 128570564 to 128570607 43 + TSS region transcription start site region 8535
Tssr195 1 128586917 to 128586941 24 - TSS region transcription start site region 195
Cxcr4 1 128588199 to 128592293 4094 - protein coding gene chemokine (C-X-C motif) receptor 4
Tssr13461 1 128588418 to 128588462 44 - TSS region transcription start site region 13461
Tssr13462 1 128588604 to 128588632 28 - TSS region transcription start site region 13462
Tssr13463 1 128588700 to 128588732 32 - TSS region transcription start site region 13463
Tssr13464 1 128588757 to 128588774 17 - TSS region transcription start site region 13464
Tssr13465 1 128588775 to 128588787 12 - TSS region transcription start site region 13465
Tssr13466 1 128588840 to 128588858 18 - TSS region transcription start site region 13466
Tssr13467 1 128588887 to 128588900 13 - TSS region transcription start site region 13467
Tssr13468 1 128588976 to 128588986 10 - TSS region transcription start site region 13468
Tssr13469 1 128589029 to 128589040 11 - TSS region transcription start site region 13469
Tssr13470 1 128589124 to 128589130 6 - TSS region transcription start site region 13470
Tssr13471 1 128589193 to 128589202 9 - TSS region transcription start site region 13471
Tssr13472 1 128589262 to 128589270 8 - TSS region transcription start site region 13472
Tssr13473 1 128589275 to 128589285 10 - TSS region transcription start site region 13473
Tssr13474 1 128589331 to 128589346 15 - TSS region transcription start site region 13474
Tssr13475 1 128589355 to 128589367 12 - TSS region transcription start site region 13475
Tssr13476 1 128589372 to 128589379 7 - TSS region transcription start site region 13476
Tssr13477 1 128589433 to 128589445 12 - TSS region transcription start site region 13477
Cpgi697 1 128590784 to 128592520 1736 CpG island CpG island 697
Tssr13478 1 128590816 to 128590833 17 - TSS region transcription start site region 13478
Tssr13479 1 128590845 to 128590894 49 - TSS region transcription start site region 13479
Tssr8536 1 128590954 to 128590999 45 + TSS region transcription start site region 8536
Tssr13480 1 128591167 to 128591183 16 - TSS region transcription start site region 13480
Tssr8537 1 128591277 to 128591290 13 + TSS region transcription start site region 8537
Tssr8538 1 128591305 to 128591316 11 + TSS region transcription start site region 8538
Tssr8539 1 128591319 to 128591361 42 + TSS region transcription start site region 8539
Tssr196 1 128592236 to 128592262 26 - TSS region transcription start site region 196
Tssr13481 1 128592284 to 128592307 23 - TSS region transcription start site region 13481
Tssr8540 1 128592445 to 128592458 13 + TSS region transcription start site region 8540
Cpgi698 1 128593124 to 128593338 214 CpG island CpG island 698
Tssr13482 1 128607974 to 128607986 12 - TSS region transcription start site region 13482
Tssr8541 1 128612806 to 128612843 37 + TSS region transcription start site region 8541
Tssr13483 1 128614870 to 128614881 11 - TSS region transcription start site region 13483
Tssr8542 1 128705429 to 128705442 13 + TSS region transcription start site region 8542
Tssr8543 1 128705468 to 128705493 25 + TSS region transcription start site region 8543
Tssr8544 1 128705743 to 128705758 15 + TSS region transcription start site region 8544
Tssr13484 1 128712835 to 128712846 11 - TSS region transcription start site region 13484
Tssr13485 1 128712847 to 128712865 18 - TSS region transcription start site region 13485
Tssr197 1 128712970 to 128712994 24 - TSS region transcription start site region 197
Tssr8545 1 128713189 to 128713198 9 + TSS region transcription start site region 8545
Tssr13486 1 128730043 to 128730069 26 - TSS region transcription start site region 13486
Tssr13487 1 128747538 to 128747551 13 - TSS region transcription start site region 13487
Tssr8546 1 128747680 to 128747700 20 + TSS region transcription start site region 8546
Gm29599 1 128750926 to 128751347 421 + pseudogene predicted gene 29599
Tssr13488 1 128766891 to 128766895 4 - TSS region transcription start site region 13488
Tssr198 1 128767188 to 128767195 7 + TSS region transcription start site region 198
Gm26686 1 128770599 to 128774421 3822 - lincRNA gene predicted gene, 26686
Tssr8547 1 128787549 to 128787581 32 + TSS region transcription start site region 8547
D1Mit344 1 128842889 to 128843026 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 344
D1Mit344.1 1 128843022 to 128843132 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 344.1
Gm23056 1 128885909 to 128886019 110 - snRNA gene predicted gene, 23056
D1Mit263 1 129000970 to 129001101 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 263
D1Mit1001 1 129047558 to 129047688 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1001
D1Nds1 1 129203268 to 129203348 80 DNA segment DNA segment, Chr 1, Nuffield Department of Surgery 1
Sbw1 1 129203268 to 129203348 80 QTL splenomegaly-NZB x NZW 1
D1Mit262 1 129268518 to 129268667 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 262
D1Mit262.1 1 129268628 to 129268761 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 262.1
Cpgi699 1 129273117 to 129273820 703 CpG island CpG island 699
Thsd7b 1 129273304 to 130219278 945974 + protein coding gene thrombospondin, type I, domain containing 7B
Tssr8548 1 129273436 to 129273470 34 + TSS region transcription start site region 8548
Tssr8549 1 129273471 to 129273482 11 + TSS region transcription start site region 8549
Tssr8550 1 129273491 to 129273498 7 + TSS region transcription start site region 8550
Gm38240 1 129283107 to 129285593 2486 + unclassified gene predicted gene, 38240
Gm38330 1 129372304 to 129373262 958 + unclassified gene predicted gene, 38330
Tssr13489 1 129550314 to 129550340 26 - TSS region transcription start site region 13489
Cpgi700 1 129595479 to 129595663 184 CpG island CpG island 700
Gm36347 1 129608725 to 129616189 7464 - lncRNA gene predicted gene, 36347
Tssr13490 1 129616192 to 129616246 54 - TSS region transcription start site region 13490
Tssr13491 1 129680638 to 129680643 5 - TSS region transcription start site region 13491
Tssr13492 1 129680686 to 129680711 25 - TSS region transcription start site region 13492
Tssr8551 1 129680996 to 129681007 11 + TSS region transcription start site region 8551
Gm36951 1 129710543 to 129713229 2686 + unclassified gene predicted gene, 36951
D1Mit229 1 129747076 to 129747214 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 229
Gm15790 1 129796608 to 129797858 1250 - pseudogene predicted pseudogene 15790
Rpl31-ps9 1 129801387 to 129801764 377 - pseudogene ribosomal protein L31, pseudogene 9
Gm37479 1 129833148 to 129836988 3840 + unclassified gene predicted gene, 37479
Gm37064 1 129860815 to 129863045 2230 + unclassified gene predicted gene, 37064
Gm37278 1 129943162 to 129946033 2871 + unclassified gene predicted gene, 37278
Tssr8552 1 130163827 to 130163834 7 + TSS region transcription start site region 8552
Tssr8553 1 130163856 to 130163867 11 + TSS region transcription start site region 8553
Gm29428 1 130195980 to 130196388 408 + pseudogene predicted gene 29428
Gm16081 1 130269950 to 130281258 11308 - lincRNA gene predicted gene 16081
Gm41951 1 130302361 to 130308831 6470 + lncRNA gene predicted gene, 41951
Cd55b 1 130388537 to 130423009 34472 - protein coding gene CD55 molecule, decay accelerating factor for complement B
Tssr13493 1 130422719 to 130422739 20 - TSS region transcription start site region 13493
Tssr13494 1 130422747 to 130422759 12 - TSS region transcription start site region 13494
Tssr13495 1 130422770 to 130422792 22 - TSS region transcription start site region 13495
Gm15674 1 130422824 to 130437914 15090 + antisense lncRNA gene predicted gene 15674
Tssr13496 1 130423022 to 130423065 43 - TSS region transcription start site region 13496
Tssr13497 1 130423066 to 130423082 16 - TSS region transcription start site region 13497
Gm15675 1 130429781 to 130437191 7410 - lincRNA gene predicted gene 15675
Cd55 1 130439027 to 130462744 23717 - protein coding gene CD55 molecule, decay accelerating factor for complement
Tssr13498 1 130448720 to 130448734 14 - TSS region transcription start site region 13498
Tssr13499 1 130448998 to 130449027 29 - TSS region transcription start site region 13499
Tssr13500 1 130449149 to 130449175 26 - TSS region transcription start site region 13500
Tssr13501 1 130449216 to 130449228 12 - TSS region transcription start site region 13501
Tssr13502 1 130449267 to 130449279 12 - TSS region transcription start site region 13502
Tssr13503 1 130452518 to 130452530 12 - TSS region transcription start site region 13503
Cpgi701 1 130462215 to 130462810 595 CpG island CpG island 701
Tssr8554 1 130462272 to 130462312 40 + TSS region transcription start site region 8554
Tssr13504 1 130462470 to 130462519 49 - TSS region transcription start site region 13504
Tssr8555 1 130462558 to 130462609 51 + TSS region transcription start site region 8555
Tssr13505 1 130462680 to 130462771 91 - TSS region transcription start site region 13505
Tssr13506 1 130462984 to 130463008 24 - TSS region transcription start site region 13506
Tssr8556 1 130464106 to 130464113 7 + TSS region transcription start site region 8556
Gm37109 1 130467972 to 130470225 2253 + unclassified gene predicted gene, 37109
Gm37283 1 130473743 to 130475313 1570 + unclassified gene predicted gene, 37283
Tssr8557 1 130478493 to 130478497 4 + TSS region transcription start site region 8557
D1Mit29 1 130498322 to 130498563 241 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 29
Tssr8558 1 130508889 to 130508893 4 + TSS region transcription start site region 8558
Gm16083 1 130515048 to 130557069 42021 + antisense lncRNA gene predicted gene 16083
Tssr8559 1 130551006 to 130551021 15 + TSS region transcription start site region 8559
Zp3r 1 130576713 to 130629621 52908 - protein coding gene zona pellucida 3 receptor
Gm23623 1 130595570 to 130595676 106 - snRNA gene predicted gene, 23623
Tssr13507 1 130629563 to 130629574 11 - TSS region transcription start site region 13507
Tssr199 1 130629578 to 130629581 3 - TSS region transcription start site region 199
Tssr13508 1 130629598 to 130629607 9 - TSS region transcription start site region 13508
Tssr13509 1 130629614 to 130629626 12 - TSS region transcription start site region 13509
C4bp 1 130635921 to 130661645 25724 - protein coding gene complement component 4 binding protein
Tssr13510 1 130647468 to 130647473 5 - TSS region transcription start site region 13510
D1Ertd273e 1 130651495 to 130651734 239 DNA segment DNA segment, Chr 1, ERATO Doi 273, expressed
Tssr13511 1 130661491 to 130661511 20 - TSS region transcription start site region 13511
Tssr13512 1 130661524 to 130661539 15 - TSS region transcription start site region 13512
Tssr13513 1 130661553 to 130661564 11 - TSS region transcription start site region 13513
Tssr13514 1 130661565 to 130661583 18 - TSS region transcription start site region 13514
Tssr13515 1 130661584 to 130661609 25 - TSS region transcription start site region 13515
Tssr13516 1 130661613 to 130661637 24 - TSS region transcription start site region 13516
Tssr13517 1 130661654 to 130661663 9 - TSS region transcription start site region 13517
C4bp-ps1 1 130670202 to 130681571 11369 - pseudogene complement component 4 binding protein, pseudogene 1
Gm29427 1 130670209 to 130715799 45590 - protein coding gene predicted gene 29427
Pfkfb2 1 130689182 to 130729253 40071 - protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
Cpgi702 1 130715513 to 130716009 496 CpG island CpG island 702
Tssr13518 1 130715772 to 130715825 53 - TSS region transcription start site region 13518
Tssr13519 1 130715827 to 130715848 21 - TSS region transcription start site region 13519
Tssr13520 1 130716005 to 130716032 27 - TSS region transcription start site region 13520
Tssr8560 1 130716130 to 130716171 41 + TSS region transcription start site region 8560
Cpgi703 1 130716572 to 130717980 1408 CpG island CpG island 703
Tssr13521 1 130716934 to 130716975 41 - TSS region transcription start site region 13521
Tssr8561 1 130717060 to 130717080 20 + TSS region transcription start site region 8561
Tssr8562 1 130717084 to 130717098 14 + TSS region transcription start site region 8562
Tssr8563 1 130717320 to 130717333 13 + TSS region transcription start site region 8563
Yod1 1 130717327 to 130722073 4746 + protein coding gene YOD1 deubiquitinase
Tssr8564 1 130717502 to 130717561 59 + TSS region transcription start site region 8564
Gm37163 1 130727132 to 130728821 1689 - unclassified gene predicted gene, 37163
Tssr13522 1 130729249 to 130729260 11 - TSS region transcription start site region 13522
Tssr8565 1 130731963 to 130731991 28 + TSS region transcription start site region 8565
AA986860 1 130731976 to 130744622 12646 + protein coding gene expressed sequence AA986860
Tssr8566 1 130732041 to 130732052 11 + TSS region transcription start site region 8566
Tssr8567 1 130732094 to 130732101 7 + TSS region transcription start site region 8567
Tssr8568 1 130732103 to 130732135 32 + TSS region transcription start site region 8568
Tssr13523 1 130732618 to 130732622 4 - TSS region transcription start site region 13523
Tssr13524 1 130733850 to 130733853 3 - TSS region transcription start site region 13524
Gm28857 1 130740162 to 130741327 1165 - antisense lncRNA gene predicted gene 28857
Tssr13525 1 130741286 to 130741296 10 - TSS region transcription start site region 13525
Tssr13526 1 130764072 to 130764083 11 - TSS region transcription start site region 13526
Tssr13527 1 130764095 to 130764109 14 - TSS region transcription start site region 13527
Tssr8569 1 130764971 to 130764988 17 + TSS region transcription start site region 8569
Gm28856 1 130766384 to 130784433 18049 + lincRNA gene predicted gene 28856
Tssr13528 1 130780012 to 130780020 8 - TSS region transcription start site region 13528
Tssr8570 1 130800635 to 130800640 5 + TSS region transcription start site region 8570
Fcamr 1 130800902 to 130814740 13838 + protein coding gene Fc receptor, IgA, IgM, high affinity
Tssr8571 1 130803082 to 130803091 9 + TSS region transcription start site region 8571
Gm15848 1 130809979 to 130818910 8931 - antisense lncRNA gene predicted gene 15848
Tssr13529 1 130820706 to 130820729 23 - TSS region transcription start site region 13529
Tssr8572 1 130826659 to 130826665 6 + TSS region transcription start site region 8572
Tssr8573 1 130826676 to 130826755 79 + TSS region transcription start site region 8573
Pigr 1 130826684 to 130852249 25565 + protein coding gene polymeric immunoglobulin receptor
Tssr8574 1 130826762 to 130826769 7 + TSS region transcription start site region 8574
Tssr200 1 130832064 to 130832068 4 - TSS region transcription start site region 200
Tssr8575 1 130834395 to 130834416 21 + TSS region transcription start site region 8575
Tssr8576 1 130841546 to 130841559 13 + TSS region transcription start site region 8576
Tssr8577 1 130841692 to 130841704 12 + TSS region transcription start site region 8577
Tssr8578 1 130844691 to 130844701 10 + TSS region transcription start site region 8578
Tssr8579 1 130846369 to 130846401 32 + TSS region transcription start site region 8579
Tssr8580 1 130847473 to 130847485 12 + TSS region transcription start site region 8580
Tssr8581 1 130848434 to 130848446 12 + TSS region transcription start site region 8581
Tssr8582 1 130849046 to 130849079 33 + TSS region transcription start site region 8582
Tssr8583 1 130849572 to 130849583 11 + TSS region transcription start site region 8583
Tssr8584 1 130850700 to 130850709 9 + TSS region transcription start site region 8584
Tssr8585 1 130850733 to 130850742 9 + TSS region transcription start site region 8585
Tssr8586 1 130851407 to 130851420 13 + TSS region transcription start site region 8586
Tssr8587 1 130851433 to 130851444 11 + TSS region transcription start site region 8587
Tssr201 1 130851447 to 130851454 7 + TSS region transcription start site region 201
Tssr8588 1 130851459 to 130851465 6 + TSS region transcription start site region 8588
Tssr8589 1 130851533 to 130851544 11 + TSS region transcription start site region 8589
Tssr8590 1 130851549 to 130851556 7 + TSS region transcription start site region 8590