Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:12842554-13972408

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sulf1 1 12692277 to 12861192 168915 + protein coding gene sulfatase 1
Fecq3 1 12846696 to 26478604 13631908 QTL fecundity QTL 3
D1Mit64 1 12846696 to 12846827 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 64
Slco5a1 1 12866549 to 12992650 126101 - protein coding gene solute carrier organic anion transporter family, member 5A1
Cpgi38 1 12990095 to 12992937 2842 CpG island CpG island 38
Tssr5960 1 12990412 to 12990426 14 + TSS region transcription start site region 5960
Tssr10974 1 12990473 to 12990482 9 - TSS region transcription start site region 10974
Tssr10975 1 12991109 to 12991152 43 - TSS region transcription start site region 10975
Tssr11 1 12992328 to 12992356 28 - TSS region transcription start site region 11
Tssr10976 1 12992650 to 12992666 16 - TSS region transcription start site region 10976
Tssr10977 1 12992730 to 12992747 17 - TSS region transcription start site region 10977
Tssr10978 1 13023269 to 13023319 50 - TSS region transcription start site region 10978
Gm37162 1 13059401 to 13059951 550 - unclassified gene predicted gene, 37162
Gm5250 1 13062025 to 13062345 320 + pseudogene predicted gene 5250
Tssr12 1 13063065 to 13063067 2 + TSS region transcription start site region 12
Gm29283 1 13068838 to 13078662 9824 + lincRNA gene predicted gene 29283
Tssr5961 1 13069893 to 13069901 8 + TSS region transcription start site region 5961
Gm39592 1 13090688 to 13104959 14271 - lncRNA gene predicted gene, 39592
Tssr5962 1 13094903 to 13094906 3 + TSS region transcription start site region 5962
Tssr10979 1 13096060 to 13096082 22 - TSS region transcription start site region 10979
Tssr10980 1 13096103 to 13096111 8 - TSS region transcription start site region 10980
Tssr10981 1 13104066 to 13104076 10 - TSS region transcription start site region 10981
Prdm14 1 13113457 to 13127163 13706 - protein coding gene PR domain containing 14
Cpgi39 1 13126287 to 13126801 514 CpG island CpG island 39
Tssr10982 1 13127223 to 13127249 26 - TSS region transcription start site region 10982
Cpgi40 1 13128471 to 13128722 251 CpG island CpG island 40
Ncoa2 1 13139105 to 13374083 234978 - protein coding gene nuclear receptor coactivator 2
Tssr10983 1 13162483 to 13162516 33 - TSS region transcription start site region 10983
Tssr5963 1 13177142 to 13177145 3 + TSS region transcription start site region 5963
Gm38376 1 13177462 to 13179714 2252 - unclassified gene predicted gene, 38376
Tssr10984 1 13217094 to 13217099 5 - TSS region transcription start site region 10984
Tssr10985 1 13225928 to 13225947 19 - TSS region transcription start site region 10985
Tssr10986 1 13225957 to 13225970 13 - TSS region transcription start site region 10986
Gm37409 1 13234809 to 13236434 1625 - unclassified gene predicted gene, 37409
Tssr10987 1 13259526 to 13259530 4 - TSS region transcription start site region 10987
Gm27881 1 13262198 to 13262279 81 + miRNA gene predicted gene, 27881
Gm38223 1 13289812 to 13290506 694 - unclassified gene predicted gene, 38223
Gm37702 1 13297036 to 13298907 1871 - unclassified gene predicted gene, 37702
D1Mit67 1 13297384 to 13297523 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 67
Morph1 1 13297384 to 13297523 139 QTL morphine antinociception 1
D1Mit66 1 13309638 to 13309794 156 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 66
D1Mit68 1 13322616 to 13322789 173 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 68
Gm23169 1 13334498 to 13334609 111 - snRNA gene predicted gene, 23169
Gm38120 1 13343563 to 13348204 4641 - unclassified gene predicted gene, 38120
Gm38380 1 13354483 to 13356730 2247 - unclassified gene predicted gene, 38380
Tssr10988 1 13360699 to 13360708 9 - TSS region transcription start site region 10988
Tssr5964 1 13360831 to 13360871 40 + TSS region transcription start site region 5964
Cpgi41 1 13372212 to 13374892 2680 CpG island CpG island 41
Tssr10989 1 13372434 to 13372457 23 - TSS region transcription start site region 10989
Tssr5965 1 13372916 to 13372918 2 + TSS region transcription start site region 5965
Tssr10990 1 13373642 to 13373664 22 - TSS region transcription start site region 10990
Tssr10991 1 13373879 to 13373891 12 - TSS region transcription start site region 10991
Tssr10992 1 13374027 to 13374069 42 - TSS region transcription start site region 10992
Tssr10993 1 13374072 to 13374075 3 - TSS region transcription start site region 10993
Tssr10994 1 13374121 to 13374182 61 - TSS region transcription start site region 10994
Tssr10995 1 13374220 to 13374263 43 - TSS region transcription start site region 10995
Tssr10996 1 13374396 to 13374411 15 - TSS region transcription start site region 10996
Tssr10997 1 13374432 to 13374475 43 - TSS region transcription start site region 10997
Gm29570 1 13376070 to 13388413 12343 + antisense lncRNA gene predicted gene 29570
Tssr5966 1 13388828 to 13388854 26 + TSS region transcription start site region 5966
Gm39595 1 13392554 to 13422408 29854 - lncRNA gene predicted gene, 39595
Gm7593 1 13407012 to 13407655 643 - pseudogene predicted gene 7593
Tssr10998 1 13426804 to 13426814 10 - TSS region transcription start site region 10998
Tssr10999 1 13426839 to 13426850 11 - TSS region transcription start site region 10999
Tssr5967 1 13436490 to 13436494 4 + TSS region transcription start site region 5967
Gm39600 1 13436514 to 13436800 286 + pseudogene predicted gene, 39600
Cpgi42 1 13531681 to 13531842 161 CpG island CpG island 42
Tram1 1 13564698 to 13589910 25212 - protein coding gene translocating chain-associating membrane protein 1
Tssr11000 1 13565232 to 13565274 42 - TSS region transcription start site region 11000
Tssr11001 1 13565939 to 13565957 18 - TSS region transcription start site region 11001
Tssr11002 1 13566097 to 13566178 81 - TSS region transcription start site region 11002
Tssr11003 1 13587825 to 13587830 5 - TSS region transcription start site region 11003
Tssr11004 1 13588975 to 13588977 2 - TSS region transcription start site region 11004
Cpgi43 1 13589083 to 13590328 1245 CpG island CpG island 43
Tssr11005 1 13589717 to 13589904 187 - TSS region transcription start site region 11005
Tssr5968 1 13593595 to 13593611 16 + TSS region transcription start site region 5968
Lactb2 1 13625898 to 13660605 34707 - protein coding gene lactamase, beta 2
Tssr11006 1 13626205 to 13626210 5 - TSS region transcription start site region 11006
Gm38319 1 13641483 to 13642748 1265 - unclassified gene predicted gene, 38319
Cpgi44 1 13660064 to 13660774 710 CpG island CpG island 44
Tssr11007 1 13660454 to 13660469 15 - TSS region transcription start site region 11007
Tssr11008 1 13660476 to 13660554 78 - TSS region transcription start site region 11008
Tssr11009 1 13660639 to 13660650 11 - TSS region transcription start site region 11009
Tssr11010 1 13660745 to 13660755 10 - TSS region transcription start site region 11010
Tssr5969 1 13668739 to 13668772 33 + TSS region transcription start site region 5969
Xkr9 1 13668771 to 13701723 32952 + protein coding gene X-linked Kx blood group related 9
Tssr5970 1 13668773 to 13668794 21 + TSS region transcription start site region 5970
Tssr5971 1 13668799 to 13668812 13 + TSS region transcription start site region 5971
Tssr5972 1 13669001 to 13669040 39 + TSS region transcription start site region 5972
Tssr11011 1 13669788 to 13669792 4 - TSS region transcription start site region 11011
Gm26273 1 13774334 to 13774464 130 - snoRNA gene predicted gene, 26273
Gm2452 1 13774628 to 13775938 1310 - pseudogene predicted gene 2452
Gm5523 1 13785883 to 13786879 996 - pseudogene predicted pseudogene 5523
Tssr11012 1 13827532 to 13827540 8 - TSS region transcription start site region 11012
Gm31195 1 13846500 to 13881933 35433 + lncRNA gene predicted gene, 31195
Tssr5973 1 13846590 to 13846618 28 + TSS region transcription start site region 5973
Gm36947 1 13846871 to 13849119 2248 - unclassified gene predicted gene, 36947
Tssr5974 1 13874369 to 13874377 8 + TSS region transcription start site region 5974
Tssr11013 1 13898467 to 13898470 3 - TSS region transcription start site region 11013
Gm19122 1 13916903 to 13917754 851 + pseudogene predicted gene, 19122
Gm25491 1 13932378 to 13932685 307 + unclassified non-coding RNA gene predicted gene, 25491