Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:127878937-128609949

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab3gap1 1 127868773 to 127943868 75095 + protein coding gene RAB3 GTPase activating protein subunit 1
Tssr13431 1 127896964 to 127896969 5 - TSS region transcription start site region 13431
Zranb3 1 127954184 to 128103047 148863 - protein coding gene zinc finger, RAN-binding domain containing 3
Gm28800 1 127961112 to 127965987 4875 + antisense lncRNA gene predicted gene 28800
Tssr13432 1 127976444 to 127976457 13 - TSS region transcription start site region 13432
Tssr13433 1 127976473 to 127976484 11 - TSS region transcription start site region 13433
Tssr13434 1 127976501 to 127976518 17 - TSS region transcription start site region 13434
Tssr8496 1 127978333 to 127978352 19 + TSS region transcription start site region 8496
Tssr8497 1 127978365 to 127978382 17 + TSS region transcription start site region 8497
Tssr8498 1 127978431 to 127978447 16 + TSS region transcription start site region 8498
Gm38248 1 127978905 to 127984687 5782 - unclassified gene predicted gene, 38248
Tssr8499 1 127985757 to 127985765 8 + TSS region transcription start site region 8499
Gm8283 1 128005489 to 128006453 964 - pseudogene predicted gene 8283
Tssr13435 1 128016153 to 128016189 36 - TSS region transcription start site region 13435
Tssr8500 1 128038522 to 128038525 3 + TSS region transcription start site region 8500
Rpl28-ps1 1 128038569 to 128038982 413 + pseudogene ribosomal protein L28, pseudogene 1
Tssr8501 1 128044480 to 128044487 7 + TSS region transcription start site region 8501
D1Mit393 1 128084233 to 128084377 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 393
Gm37625 1 128084460 to 128089331 4871 - unclassified gene predicted gene, 37625
Gm38026 1 128097591 to 128101470 3879 - unclassified gene predicted gene, 38026
Tssr13436 1 128102412 to 128102485 73 - TSS region transcription start site region 13436
Cpgi692 1 128102872 to 128104064 1192 CpG island CpG island 692
Tssr13437 1 128103016 to 128103053 37 - TSS region transcription start site region 13437
Tssr8502 1 128103297 to 128103311 14 + TSS region transcription start site region 8502
R3hdm1 1 128103301 to 128237736 134435 + protein coding gene R3H domain containing 1
Tssr8503 1 128103312 to 128103360 48 + TSS region transcription start site region 8503
Tssr8504 1 128103376 to 128103387 11 + TSS region transcription start site region 8504
Tssr8505 1 128104134 to 128104151 17 + TSS region transcription start site region 8505
Gm29383 1 128128410 to 128128889 479 - pseudogene predicted gene 29383
Tssr13438 1 128128914 to 128128927 13 - TSS region transcription start site region 13438
Gm37588 1 128132157 to 128134652 2495 + unclassified gene predicted gene, 37588
Tssr8506 1 128141917 to 128141933 16 + TSS region transcription start site region 8506
Tssr8507 1 128141940 to 128141968 28 + TSS region transcription start site region 8507
Tssr8508 1 128141973 to 128141990 17 + TSS region transcription start site region 8508
Tssr8509 1 128142863 to 128142871 8 + TSS region transcription start site region 8509
Tssr8510 1 128143353 to 128143359 6 + TSS region transcription start site region 8510
Gm37868 1 128143614 to 128146348 2734 + unclassified gene predicted gene, 37868
Tssr8511 1 128151232 to 128151279 47 + TSS region transcription start site region 8511
Tssr8512 1 128151806 to 128151834 28 + TSS region transcription start site region 8512
Tssr8513 1 128155631 to 128155633 2 + TSS region transcription start site region 8513
Gm37407 1 128163214 to 128164529 1315 + unclassified gene predicted gene, 37407
Tssr8514 1 128167929 to 128167941 12 + TSS region transcription start site region 8514
Tssr8515 1 128171652 to 128171657 5 + TSS region transcription start site region 8515
Tssr8516 1 128171788 to 128171820 32 + TSS region transcription start site region 8516
D1Ertd347e 1 128174508 to 128174754 246 DNA segment DNA segment, Chr 1, ERATO Doi 347, expressed
Tssr8517 1 128178918 to 128178932 14 + TSS region transcription start site region 8517
Tssr8518 1 128190388 to 128190403 15 + TSS region transcription start site region 8518
Tssr8519 1 128193730 to 128193733 3 + TSS region transcription start site region 8519
Tssr8520 1 128196990 to 128197006 16 + TSS region transcription start site region 8520
Tssr8521 1 128197672 to 128197676 4 + TSS region transcription start site region 8521
Mir128-1 1 128202361 to 128202430 69 + miRNA gene microRNA 128-1
Tssr8522 1 128202422 to 128202429 7 + TSS region transcription start site region 8522
Cpgi693 1 128243937 to 128244949 1012 CpG island CpG island 693
Ubxn4 1 128243964 to 128279378 35414 + protein coding gene UBX domain protein 4
Tssr8523 1 128244122 to 128244175 53 + TSS region transcription start site region 8523
Tssr8524 1 128244181 to 128244199 18 + TSS region transcription start site region 8524
Tssr8525 1 128244234 to 128244249 15 + TSS region transcription start site region 8525
Tssr8526 1 128244257 to 128244325 68 + TSS region transcription start site region 8526
Tssr8527 1 128244342 to 128244353 11 + TSS region transcription start site region 8527
Tssr8528 1 128244432 to 128244443 11 + TSS region transcription start site region 8528
Gm41949 1 128244559 to 128251119 6560 + lncRNA gene predicted gene, 41949
Tssr8529 1 128244584 to 128244593 9 + TSS region transcription start site region 8529
Tssr8530 1 128244756 to 128244761 5 + TSS region transcription start site region 8530
Tssr8531 1 128252195 to 128252218 23 + TSS region transcription start site region 8531
Tssr8532 1 128256181 to 128256203 22 + TSS region transcription start site region 8532
Tssr8533 1 128259439 to 128259468 29 + TSS region transcription start site region 8533
Tssr13439 1 128281016 to 128281020 4 - TSS region transcription start site region 13439
Lct 1 128284756 to 128328318 43562 - protein coding gene lactase
Tssr13440 1 128299505 to 128299524 19 - TSS region transcription start site region 13440
Tssr13441 1 128299589 to 128299634 45 - TSS region transcription start site region 13441
Tssr13442 1 128299953 to 128299987 34 - TSS region transcription start site region 13442
Tssr13443 1 128319098 to 128319114 16 - TSS region transcription start site region 13443
Tssr13444 1 128319220 to 128319238 18 - TSS region transcription start site region 13444
Tssr13445 1 128324323 to 128324327 4 - TSS region transcription start site region 13445
Tssr13446 1 128324497 to 128324502 5 - TSS region transcription start site region 13446
Tssr13447 1 128327749 to 128327755 6 - TSS region transcription start site region 13447
Tssr13448 1 128328311 to 128328326 15 - TSS region transcription start site region 13448
Mcm6 1 128331590 to 128359664 28074 - protein coding gene minichromosome maintenance complex component 6
Tssr13449 1 128343467 to 128343480 13 - TSS region transcription start site region 13449
Cpgi694 1 128359225 to 128359930 705 CpG island CpG island 694
Tssr13450 1 128359597 to 128359609 12 - TSS region transcription start site region 13450
Tssr13451 1 128359610 to 128359698 88 - TSS region transcription start site region 13451
Dars 1 128363707 to 128417368 53661 - protein coding gene aspartyl-tRNA synthetase
Tssr192 1 128373504 to 128373515 11 + TSS region transcription start site region 192
Tssr8534 1 128399359 to 128399383 24 + TSS region transcription start site region 8534
Tssr13452 1 128404573 to 128404577 4 - TSS region transcription start site region 13452
Tssr13453 1 128414023 to 128414028 5 - TSS region transcription start site region 13453
Cpgi695 1 128416690 to 128417558 868 CpG island CpG island 695
Tssr13454 1 128417221 to 128417230 9 - TSS region transcription start site region 13454
Tssr13455 1 128417235 to 128417246 11 - TSS region transcription start site region 13455
Tssr13456 1 128417272 to 128417283 11 - TSS region transcription start site region 13456
Tssr193 1 128417294 to 128417305 11 - TSS region transcription start site region 193
Tssr13457 1 128417316 to 128417350 34 - TSS region transcription start site region 13457
Tssr13458 1 128417352 to 128417384 32 - TSS region transcription start site region 13458
Tssr13459 1 128447272 to 128447284 12 - TSS region transcription start site region 13459
Cpgi696 1 128472492 to 128472668 176 CpG island CpG island 696
Gm23902 1 128490040 to 128490173 133 + snoRNA gene predicted gene, 23902
Gm29598 1 128493845 to 128494432 587 - pseudogene predicted gene 29598
Gm29597 1 128514810 to 128515117 307 - pseudogene predicted gene 29597
Gm25384 1 128515115 to 128515219 104 - snRNA gene predicted gene, 25384
Gm6170 1 128520073 to 128521460 1387 - pseudogene predicted gene 6170
Gm41950 1 128542355 to 128549406 7051 + lncRNA gene predicted gene, 41950
D1Mit99 1 128551085 to 128551281 196 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 99
D1Mit286 1 128551097 to 128551241 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 286
Tssr13460 1 128561618 to 128561621 3 - TSS region transcription start site region 13460
Tssr194 1 128570052 to 128570061 9 - TSS region transcription start site region 194
Tssr8535 1 128570564 to 128570607 43 + TSS region transcription start site region 8535
Tssr195 1 128586917 to 128586941 24 - TSS region transcription start site region 195
Cxcr4 1 128588199 to 128592293 4094 - protein coding gene chemokine (C-X-C motif) receptor 4
Tssr13461 1 128588418 to 128588462 44 - TSS region transcription start site region 13461
Tssr13462 1 128588604 to 128588632 28 - TSS region transcription start site region 13462
Tssr13463 1 128588700 to 128588732 32 - TSS region transcription start site region 13463
Tssr13464 1 128588757 to 128588774 17 - TSS region transcription start site region 13464
Tssr13465 1 128588775 to 128588787 12 - TSS region transcription start site region 13465
Tssr13466 1 128588840 to 128588858 18 - TSS region transcription start site region 13466
Tssr13467 1 128588887 to 128588900 13 - TSS region transcription start site region 13467
Tssr13468 1 128588976 to 128588986 10 - TSS region transcription start site region 13468
Tssr13469 1 128589029 to 128589040 11 - TSS region transcription start site region 13469
Tssr13470 1 128589124 to 128589130 6 - TSS region transcription start site region 13470
Tssr13471 1 128589193 to 128589202 9 - TSS region transcription start site region 13471
Tssr13472 1 128589262 to 128589270 8 - TSS region transcription start site region 13472
Tssr13473 1 128589275 to 128589285 10 - TSS region transcription start site region 13473
Tssr13474 1 128589331 to 128589346 15 - TSS region transcription start site region 13474
Tssr13475 1 128589355 to 128589367 12 - TSS region transcription start site region 13475
Tssr13476 1 128589372 to 128589379 7 - TSS region transcription start site region 13476
Tssr13477 1 128589433 to 128589445 12 - TSS region transcription start site region 13477
Cpgi697 1 128590784 to 128592520 1736 CpG island CpG island 697
Tssr13478 1 128590816 to 128590833 17 - TSS region transcription start site region 13478
Tssr13479 1 128590845 to 128590894 49 - TSS region transcription start site region 13479
Tssr8536 1 128590954 to 128590999 45 + TSS region transcription start site region 8536
Tssr13480 1 128591167 to 128591183 16 - TSS region transcription start site region 13480
Tssr8537 1 128591277 to 128591290 13 + TSS region transcription start site region 8537
Tssr8538 1 128591305 to 128591316 11 + TSS region transcription start site region 8538
Tssr8539 1 128591319 to 128591361 42 + TSS region transcription start site region 8539
Tssr196 1 128592236 to 128592262 26 - TSS region transcription start site region 196
Tssr13481 1 128592284 to 128592307 23 - TSS region transcription start site region 13481
Tssr8540 1 128592445 to 128592458 13 + TSS region transcription start site region 8540
Cpgi698 1 128593124 to 128593338 214 CpG island CpG island 698
Tssr13482 1 128607974 to 128607986 12 - TSS region transcription start site region 13482