Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:127446557-128256767

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mgat5 1 127205015 to 127488336 283321 + protein coding gene mannoside acetylglucosaminyltransferase 5
Gm41947 1 127451772 to 127477965 26193 - lncRNA gene predicted gene, 41947
Tssr8482 1 127483029 to 127483033 4 + TSS region transcription start site region 8482
Tssr8483 1 127486724 to 127486750 26 + TSS region transcription start site region 8483
Tssr8484 1 127487616 to 127487617 1 + TSS region transcription start site region 8484
Tmem163 1 127490342 to 127679621 189279 - protein coding gene transmembrane protein 163
Tssr13420 1 127537439 to 127537446 7 - TSS region transcription start site region 13420
Tssr13421 1 127577833 to 127577834 1 - TSS region transcription start site region 13421
Obq17 1 127625442 to 127625561 119 QTL obesity QTL 17
Bglu12 1 127625442 to 127625561 119 QTL blood glucose level 12
D1Mit495 1 127625442 to 127625561 119 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 495
Cpgi689 1 127676670 to 127678421 1751 CpG island CpG island 689
Tssr13422 1 127677745 to 127677798 53 - TSS region transcription start site region 13422
Tssr13423 1 127677882 to 127677897 15 - TSS region transcription start site region 13423
Tssr13424 1 127677923 to 127677956 33 - TSS region transcription start site region 13424
Gm35993 1 127693611 to 127732964 39353 - lncRNA gene predicted gene, 35993
Tssr8485 1 127729405 to 127729418 13 + TSS region transcription start site region 8485
Acmsd 1 127729413 to 127767564 38151 + protein coding gene amino carboxymuconate semialdehyde decarboxylase
Tssr8486 1 127729430 to 127729435 5 + TSS region transcription start site region 8486
Tssr8487 1 127731348 to 127731382 34 + TSS region transcription start site region 8487
Tssr13425 1 127732525 to 127732556 31 - TSS region transcription start site region 13425
Tssr13426 1 127732557 to 127732572 15 - TSS region transcription start site region 13426
Tssr13427 1 127732577 to 127732629 52 - TSS region transcription start site region 13427
Tssr13428 1 127732931 to 127732977 46 - TSS region transcription start site region 13428
2900009J06Rik 1 127753617 to 127774054 20437 - antisense lncRNA gene RIKEN cDNA 2900009J06 gene
Tssr8488 1 127756751 to 127756763 12 + TSS region transcription start site region 8488
Cpgi690 1 127773829 to 127774937 1108 CpG island CpG island 690
Ccnt2 1 127774164 to 127804837 30673 + protein coding gene cyclin T2
Tssr8489 1 127774183 to 127774238 55 + TSS region transcription start site region 8489
Tssr8490 1 127774241 to 127774272 31 + TSS region transcription start site region 8490
Tssr8491 1 127783584 to 127783594 10 + TSS region transcription start site region 8491
Tssr8492 1 127793479 to 127793481 2 + TSS region transcription start site region 8492
Tssr8493 1 127797522 to 127797527 5 + TSS region transcription start site region 8493
Map3k19 1 127815253 to 127855031 39778 - protein coding gene mitogen-activated protein kinase kinase kinase 19
D1Ertd57e 1 127851557 to 127851767 210 DNA segment DNA segment, Chr 1, ERATO Doi 57, expressed
Tssr13429 1 127854996 to 127855030 34 - TSS region transcription start site region 13429
Tssr13430 1 127859029 to 127859045 16 - TSS region transcription start site region 13430
Cpgi691 1 127868619 to 127869251 632 CpG island CpG island 691
Tssr8494 1 127868771 to 127868780 9 + TSS region transcription start site region 8494
Rab3gap1 1 127868773 to 127943868 75095 + protein coding gene RAB3 GTPase activating protein subunit 1
Tssr8495 1 127868784 to 127868807 23 + TSS region transcription start site region 8495
Tssr13431 1 127896964 to 127896969 5 - TSS region transcription start site region 13431
Zranb3 1 127954184 to 128103047 148863 - protein coding gene zinc finger, RAN-binding domain containing 3
Gm28800 1 127961112 to 127965987 4875 + antisense lncRNA gene predicted gene 28800
Tssr13432 1 127976444 to 127976457 13 - TSS region transcription start site region 13432
Tssr13433 1 127976473 to 127976484 11 - TSS region transcription start site region 13433
Tssr13434 1 127976501 to 127976518 17 - TSS region transcription start site region 13434
Tssr8496 1 127978333 to 127978352 19 + TSS region transcription start site region 8496
Tssr8497 1 127978365 to 127978382 17 + TSS region transcription start site region 8497
Tssr8498 1 127978431 to 127978447 16 + TSS region transcription start site region 8498
Gm38248 1 127978905 to 127984687 5782 - unclassified gene predicted gene, 38248
Tssr8499 1 127985757 to 127985765 8 + TSS region transcription start site region 8499
Gm8283 1 128005489 to 128006453 964 - pseudogene predicted gene 8283
Tssr13435 1 128016153 to 128016189 36 - TSS region transcription start site region 13435
Tssr8500 1 128038522 to 128038525 3 + TSS region transcription start site region 8500
Rpl28-ps1 1 128038569 to 128038982 413 + pseudogene ribosomal protein L28, pseudogene 1
Tssr8501 1 128044480 to 128044487 7 + TSS region transcription start site region 8501
D1Mit393 1 128084233 to 128084377 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 393
Gm37625 1 128084460 to 128089331 4871 - unclassified gene predicted gene, 37625
Gm38026 1 128097591 to 128101470 3879 - unclassified gene predicted gene, 38026
Tssr13436 1 128102412 to 128102485 73 - TSS region transcription start site region 13436
Cpgi692 1 128102872 to 128104064 1192 CpG island CpG island 692
Tssr13437 1 128103016 to 128103053 37 - TSS region transcription start site region 13437
Tssr8502 1 128103297 to 128103311 14 + TSS region transcription start site region 8502
R3hdm1 1 128103301 to 128237736 134435 + protein coding gene R3H domain containing 1
Tssr8503 1 128103312 to 128103360 48 + TSS region transcription start site region 8503
Tssr8504 1 128103376 to 128103387 11 + TSS region transcription start site region 8504
Tssr8505 1 128104134 to 128104151 17 + TSS region transcription start site region 8505
Gm29383 1 128128410 to 128128889 479 - pseudogene predicted gene 29383
Tssr13438 1 128128914 to 128128927 13 - TSS region transcription start site region 13438
Gm37588 1 128132157 to 128134652 2495 + unclassified gene predicted gene, 37588
Tssr8506 1 128141917 to 128141933 16 + TSS region transcription start site region 8506
Tssr8507 1 128141940 to 128141968 28 + TSS region transcription start site region 8507
Tssr8508 1 128141973 to 128141990 17 + TSS region transcription start site region 8508
Tssr8509 1 128142863 to 128142871 8 + TSS region transcription start site region 8509
Tssr8510 1 128143353 to 128143359 6 + TSS region transcription start site region 8510
Gm37868 1 128143614 to 128146348 2734 + unclassified gene predicted gene, 37868
Tssr8511 1 128151232 to 128151279 47 + TSS region transcription start site region 8511
Tssr8512 1 128151806 to 128151834 28 + TSS region transcription start site region 8512
Tssr8513 1 128155631 to 128155633 2 + TSS region transcription start site region 8513
Gm37407 1 128163214 to 128164529 1315 + unclassified gene predicted gene, 37407
Tssr8514 1 128167929 to 128167941 12 + TSS region transcription start site region 8514
Tssr8515 1 128171652 to 128171657 5 + TSS region transcription start site region 8515
Tssr8516 1 128171788 to 128171820 32 + TSS region transcription start site region 8516
D1Ertd347e 1 128174508 to 128174754 246 DNA segment DNA segment, Chr 1, ERATO Doi 347, expressed
Tssr8517 1 128178918 to 128178932 14 + TSS region transcription start site region 8517
Tssr8518 1 128190388 to 128190403 15 + TSS region transcription start site region 8518
Tssr8519 1 128193730 to 128193733 3 + TSS region transcription start site region 8519
Tssr8520 1 128196990 to 128197006 16 + TSS region transcription start site region 8520
Tssr8521 1 128197672 to 128197676 4 + TSS region transcription start site region 8521
Mir128-1 1 128202361 to 128202430 69 + miRNA gene microRNA 128-1
Tssr8522 1 128202422 to 128202429 7 + TSS region transcription start site region 8522
Cpgi693 1 128243937 to 128244949 1012 CpG island CpG island 693
Ubxn4 1 128243964 to 128279378 35414 + protein coding gene UBX domain protein 4
Tssr8523 1 128244122 to 128244175 53 + TSS region transcription start site region 8523
Tssr8524 1 128244181 to 128244199 18 + TSS region transcription start site region 8524
Tssr8525 1 128244234 to 128244249 15 + TSS region transcription start site region 8525
Tssr8526 1 128244257 to 128244325 68 + TSS region transcription start site region 8526
Tssr8527 1 128244342 to 128244353 11 + TSS region transcription start site region 8527
Tssr8528 1 128244432 to 128244443 11 + TSS region transcription start site region 8528
Gm41949 1 128244559 to 128251119 6560 + lncRNA gene predicted gene, 41949
Tssr8529 1 128244584 to 128244593 9 + TSS region transcription start site region 8529
Tssr8530 1 128244756 to 128244761 5 + TSS region transcription start site region 8530
Tssr8531 1 128252195 to 128252218 23 + TSS region transcription start site region 8531
Tssr8532 1 128256181 to 128256203 22 + TSS region transcription start site region 8532