Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:12717328-13267356

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sulf1 1 12692277 to 12861192 168915 + protein coding gene sulfatase 1
Tssr5954 1 12718496 to 12718513 17 + TSS region transcription start site region 5954
Tssr5955 1 12718673 to 12718753 80 + TSS region transcription start site region 5955
Tssr5956 1 12725373 to 12725374 1 + TSS region transcription start site region 5956
Tssr5957 1 12744775 to 12744782 7 + TSS region transcription start site region 5957
Tssr5958 1 12772134 to 12772137 3 + TSS region transcription start site region 5958
Tssr5959 1 12807848 to 12807887 39 + TSS region transcription start site region 5959
Tssr10973 1 12814449 to 12814457 8 - TSS region transcription start site region 10973
Cpgi37 1 12836030 to 12836258 228 CpG island CpG island 37
Fecq3 1 12846696 to 26478604 13631908 QTL fecundity QTL 3
D1Mit64 1 12846696 to 12846827 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 64
Slco5a1 1 12866549 to 12992650 126101 - protein coding gene solute carrier organic anion transporter family, member 5A1
Cpgi38 1 12990095 to 12992937 2842 CpG island CpG island 38
Tssr5960 1 12990412 to 12990426 14 + TSS region transcription start site region 5960
Tssr10974 1 12990473 to 12990482 9 - TSS region transcription start site region 10974
Tssr10975 1 12991109 to 12991152 43 - TSS region transcription start site region 10975
Tssr11 1 12992328 to 12992356 28 - TSS region transcription start site region 11
Tssr10976 1 12992650 to 12992666 16 - TSS region transcription start site region 10976
Tssr10977 1 12992730 to 12992747 17 - TSS region transcription start site region 10977
Tssr10978 1 13023269 to 13023319 50 - TSS region transcription start site region 10978
Gm37162 1 13059401 to 13059951 550 - unclassified gene predicted gene, 37162
Gm5250 1 13062025 to 13062345 320 + pseudogene predicted gene 5250
Tssr12 1 13063065 to 13063067 2 + TSS region transcription start site region 12
Gm29283 1 13068838 to 13078662 9824 + lincRNA gene predicted gene 29283
Tssr5961 1 13069893 to 13069901 8 + TSS region transcription start site region 5961
Gm39592 1 13090688 to 13104959 14271 - lncRNA gene predicted gene, 39592
Tssr5962 1 13094903 to 13094906 3 + TSS region transcription start site region 5962
Tssr10979 1 13096060 to 13096082 22 - TSS region transcription start site region 10979
Tssr10980 1 13096103 to 13096111 8 - TSS region transcription start site region 10980
Tssr10981 1 13104066 to 13104076 10 - TSS region transcription start site region 10981
Prdm14 1 13113457 to 13127163 13706 - protein coding gene PR domain containing 14
Cpgi39 1 13126287 to 13126801 514 CpG island CpG island 39
Tssr10982 1 13127223 to 13127249 26 - TSS region transcription start site region 10982
Cpgi40 1 13128471 to 13128722 251 CpG island CpG island 40
Ncoa2 1 13139105 to 13374083 234978 - protein coding gene nuclear receptor coactivator 2
Tssr10983 1 13162483 to 13162516 33 - TSS region transcription start site region 10983
Tssr5963 1 13177142 to 13177145 3 + TSS region transcription start site region 5963
Gm38376 1 13177462 to 13179714 2252 - unclassified gene predicted gene, 38376
Tssr10984 1 13217094 to 13217099 5 - TSS region transcription start site region 10984
Tssr10985 1 13225928 to 13225947 19 - TSS region transcription start site region 10985
Tssr10986 1 13225957 to 13225970 13 - TSS region transcription start site region 10986
Gm37409 1 13234809 to 13236434 1625 - unclassified gene predicted gene, 37409
Tssr10987 1 13259526 to 13259530 4 - TSS region transcription start site region 10987
Gm27881 1 13262198 to 13262279 81 + miRNA gene predicted gene, 27881