Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:127070342-128099621

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi688 1 127204827 to 127206649 1822 CpG island CpG island 688
Tssr8461 1 127204989 to 127205051 62 + TSS region transcription start site region 8461
Mgat5 1 127205015 to 127488336 283321 + protein coding gene mannoside acetylglucosaminyltransferase 5
Tssr8462 1 127205197 to 127205294 97 + TSS region transcription start site region 8462
Tssr8463 1 127205299 to 127205319 20 + TSS region transcription start site region 8463
Tssr8464 1 127205347 to 127205405 58 + TSS region transcription start site region 8464
Tssr13415 1 127206061 to 127206082 21 - TSS region transcription start site region 13415
Tssr191 1 127206585 to 127206623 38 + TSS region transcription start site region 191
Tssr13416 1 127207266 to 127207272 6 - TSS region transcription start site region 13416
Tssr8465 1 127209744 to 127209748 4 + TSS region transcription start site region 8465
Tssr8466 1 127213331 to 127213362 31 + TSS region transcription start site region 8466
Tssr8467 1 127213412 to 127213430 18 + TSS region transcription start site region 8467
Tssr8468 1 127228609 to 127228617 8 + TSS region transcription start site region 8468
Tssr8469 1 127228660 to 127228670 10 + TSS region transcription start site region 8469
Gm37772 1 127242091 to 127243484 1393 + unclassified gene predicted gene, 37772
Tssr13417 1 127242161 to 127242190 29 - TSS region transcription start site region 13417
Tssr13418 1 127242244 to 127242274 30 - TSS region transcription start site region 13418
Gm37510 1 127270524 to 127275285 4761 + unclassified gene predicted gene, 37510
Tssr8470 1 127273624 to 127273635 11 + TSS region transcription start site region 8470
Gm8451 1 127282662 to 127283108 446 - pseudogene predicted gene 8451
D1Jcs10 1 127291914 to 127292218 304 DNA segment DNA segment, Chr 1, John C. Schimenti 10
Tssr8471 1 127299970 to 127299999 29 + TSS region transcription start site region 8471
Tssr8472 1 127300004 to 127300013 9 + TSS region transcription start site region 8472
Tssr8473 1 127300417 to 127300449 32 + TSS region transcription start site region 8473
Tssr8474 1 127306296 to 127306314 18 + TSS region transcription start site region 8474
Tssr8475 1 127306544 to 127306594 50 + TSS region transcription start site region 8475
Tssr8476 1 127306605 to 127306616 11 + TSS region transcription start site region 8476
Tssr8477 1 127306624 to 127306637 13 + TSS region transcription start site region 8477
Tssr8478 1 127306656 to 127306667 11 + TSS region transcription start site region 8478
Tssr8479 1 127306676 to 127306696 20 + TSS region transcription start site region 8479
Tssr8480 1 127306706 to 127306752 46 + TSS region transcription start site region 8480
Tssr8481 1 127320127 to 127320166 39 + TSS region transcription start site region 8481
Gm23370 1 127331813 to 127331941 128 + snoRNA gene predicted gene, 23370
Gm23734 1 127375131 to 127375239 108 + snoRNA gene predicted gene, 23734
Gm38301 1 127406776 to 127407318 542 + unclassified gene predicted gene, 38301
Tssr13419 1 127425185 to 127425191 6 - TSS region transcription start site region 13419
D1Mit218.2 1 127440002 to 127440117 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 218.2
D1Mit218 1 127440110 to 127440254 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 218
Gm41947 1 127451772 to 127477965 26193 - lncRNA gene predicted gene, 41947
Tssr8482 1 127483029 to 127483033 4 + TSS region transcription start site region 8482
Tssr8483 1 127486724 to 127486750 26 + TSS region transcription start site region 8483
Tssr8484 1 127487616 to 127487617 1 + TSS region transcription start site region 8484
Tmem163 1 127490342 to 127679621 189279 - protein coding gene transmembrane protein 163
Tssr13420 1 127537439 to 127537446 7 - TSS region transcription start site region 13420
Tssr13421 1 127577833 to 127577834 1 - TSS region transcription start site region 13421
Obq17 1 127625442 to 127625561 119 QTL obesity QTL 17
Bglu12 1 127625442 to 127625561 119 QTL blood glucose level 12
D1Mit495 1 127625442 to 127625561 119 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 495
Cpgi689 1 127676670 to 127678421 1751 CpG island CpG island 689
Tssr13422 1 127677745 to 127677798 53 - TSS region transcription start site region 13422
Tssr13423 1 127677882 to 127677897 15 - TSS region transcription start site region 13423
Tssr13424 1 127677923 to 127677956 33 - TSS region transcription start site region 13424
Gm35993 1 127693611 to 127732964 39353 - lncRNA gene predicted gene, 35993
Tssr8485 1 127729405 to 127729418 13 + TSS region transcription start site region 8485
Acmsd 1 127729413 to 127767564 38151 + protein coding gene amino carboxymuconate semialdehyde decarboxylase
Tssr8486 1 127729430 to 127729435 5 + TSS region transcription start site region 8486
Tssr8487 1 127731348 to 127731382 34 + TSS region transcription start site region 8487
Tssr13425 1 127732525 to 127732556 31 - TSS region transcription start site region 13425
Tssr13426 1 127732557 to 127732572 15 - TSS region transcription start site region 13426
Tssr13427 1 127732577 to 127732629 52 - TSS region transcription start site region 13427
Tssr13428 1 127732931 to 127732977 46 - TSS region transcription start site region 13428
2900009J06Rik 1 127753617 to 127774054 20437 - antisense lncRNA gene RIKEN cDNA 2900009J06 gene
Tssr8488 1 127756751 to 127756763 12 + TSS region transcription start site region 8488
Cpgi690 1 127773829 to 127774937 1108 CpG island CpG island 690
Ccnt2 1 127774164 to 127804837 30673 + protein coding gene cyclin T2
Tssr8489 1 127774183 to 127774238 55 + TSS region transcription start site region 8489
Tssr8490 1 127774241 to 127774272 31 + TSS region transcription start site region 8490
Tssr8491 1 127783584 to 127783594 10 + TSS region transcription start site region 8491
Tssr8492 1 127793479 to 127793481 2 + TSS region transcription start site region 8492
Tssr8493 1 127797522 to 127797527 5 + TSS region transcription start site region 8493
Map3k19 1 127815253 to 127855031 39778 - protein coding gene mitogen-activated protein kinase kinase kinase 19
D1Ertd57e 1 127851557 to 127851767 210 DNA segment DNA segment, Chr 1, ERATO Doi 57, expressed
Tssr13429 1 127854996 to 127855030 34 - TSS region transcription start site region 13429
Tssr13430 1 127859029 to 127859045 16 - TSS region transcription start site region 13430
Cpgi691 1 127868619 to 127869251 632 CpG island CpG island 691
Tssr8494 1 127868771 to 127868780 9 + TSS region transcription start site region 8494
Rab3gap1 1 127868773 to 127943868 75095 + protein coding gene RAB3 GTPase activating protein subunit 1
Tssr8495 1 127868784 to 127868807 23 + TSS region transcription start site region 8495
Tssr13431 1 127896964 to 127896969 5 - TSS region transcription start site region 13431
Zranb3 1 127954184 to 128103047 148863 - protein coding gene zinc finger, RAN-binding domain containing 3
Gm28800 1 127961112 to 127965987 4875 + antisense lncRNA gene predicted gene 28800
Tssr13432 1 127976444 to 127976457 13 - TSS region transcription start site region 13432
Tssr13433 1 127976473 to 127976484 11 - TSS region transcription start site region 13433
Tssr13434 1 127976501 to 127976518 17 - TSS region transcription start site region 13434
Tssr8496 1 127978333 to 127978352 19 + TSS region transcription start site region 8496
Tssr8497 1 127978365 to 127978382 17 + TSS region transcription start site region 8497
Tssr8498 1 127978431 to 127978447 16 + TSS region transcription start site region 8498
Gm38248 1 127978905 to 127984687 5782 - unclassified gene predicted gene, 38248
Tssr8499 1 127985757 to 127985765 8 + TSS region transcription start site region 8499
Gm8283 1 128005489 to 128006453 964 - pseudogene predicted gene 8283
Tssr13435 1 128016153 to 128016189 36 - TSS region transcription start site region 13435
Tssr8500 1 128038522 to 128038525 3 + TSS region transcription start site region 8500
Rpl28-ps1 1 128038569 to 128038982 413 + pseudogene ribosomal protein L28, pseudogene 1
Tssr8501 1 128044480 to 128044487 7 + TSS region transcription start site region 8501
D1Mit393 1 128084233 to 128084377 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 393
Gm37625 1 128084460 to 128089331 4871 - unclassified gene predicted gene, 37625
Gm38026 1 128097591 to 128101470 3879 - unclassified gene predicted gene, 38026