Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:126556167-130626183

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320 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nckap5 1 125913620 to 126830799 917179 - protein coding gene NCK-associated protein 5
Aaaq1 1 126568206 to 126568206 0 QTL aortic arch angle QTL 1
Tssr8458 1 126573934 to 126573939 5 + TSS region transcription start site region 8458
D1Mit98 1 126583526 to 126583676 150 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 98
Tssr13406 1 126604672 to 126604732 60 - TSS region transcription start site region 13406
Tssr13407 1 126626302 to 126626306 4 - TSS region transcription start site region 13407
Tssr13408 1 126694096 to 126694100 4 - TSS region transcription start site region 13408
D1Mit494 1 126710525 to 126710742 217 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 494
Melm1 1 126710525 to 126710742 217 QTL melanoma modifier 1
Tssr13409 1 126738153 to 126738163 10 - TSS region transcription start site region 13409
Tssr13410 1 126738167 to 126738230 63 - TSS region transcription start site region 13410
Tssr190 1 126824742 to 126824747 5 - TSS region transcription start site region 190
Tssr13411 1 126830371 to 126830389 18 - TSS region transcription start site region 13411
Tssr13412 1 126830428 to 126830437 9 - TSS region transcription start site region 13412
Tssr13413 1 126830733 to 126830778 45 - TSS region transcription start site region 13413
Tssr13414 1 126830786 to 126830798 12 - TSS region transcription start site region 13414
Tssr8459 1 126844446 to 126844448 2 + TSS region transcription start site region 8459
4930599A14Rik 1 126872203 to 126876615 4412 - lincRNA gene RIKEN cDNA 4930599A14 gene
Tssr8460 1 126992786 to 126992791 5 + TSS region transcription start site region 8460
Gm41945 1 127016342 to 127023311 6969 - lncRNA gene predicted gene, 41945
Gm5261 1 127049984 to 127050696 712 - pseudogene predicted gene 5261
Cpgi688 1 127204827 to 127206649 1822 CpG island CpG island 688
Tssr8461 1 127204989 to 127205051 62 + TSS region transcription start site region 8461
Mgat5 1 127205015 to 127488336 283321 + protein coding gene mannoside acetylglucosaminyltransferase 5
Tssr8462 1 127205197 to 127205294 97 + TSS region transcription start site region 8462
Tssr8463 1 127205299 to 127205319 20 + TSS region transcription start site region 8463
Tssr8464 1 127205347 to 127205405 58 + TSS region transcription start site region 8464
Tssr13415 1 127206061 to 127206082 21 - TSS region transcription start site region 13415
Tssr191 1 127206585 to 127206623 38 + TSS region transcription start site region 191
Tssr13416 1 127207266 to 127207272 6 - TSS region transcription start site region 13416
Tssr8465 1 127209744 to 127209748 4 + TSS region transcription start site region 8465
Tssr8466 1 127213331 to 127213362 31 + TSS region transcription start site region 8466
Tssr8467 1 127213412 to 127213430 18 + TSS region transcription start site region 8467
Tssr8468 1 127228609 to 127228617 8 + TSS region transcription start site region 8468
Tssr8469 1 127228660 to 127228670 10 + TSS region transcription start site region 8469
Gm37772 1 127242091 to 127243484 1393 + unclassified gene predicted gene, 37772
Tssr13417 1 127242161 to 127242190 29 - TSS region transcription start site region 13417
Tssr13418 1 127242244 to 127242274 30 - TSS region transcription start site region 13418
Gm37510 1 127270524 to 127275285 4761 + unclassified gene predicted gene, 37510
Tssr8470 1 127273624 to 127273635 11 + TSS region transcription start site region 8470
Gm8451 1 127282662 to 127283108 446 - pseudogene predicted gene 8451
D1Jcs10 1 127291914 to 127292218 304 DNA segment DNA segment, Chr 1, John C. Schimenti 10
Tssr8471 1 127299970 to 127299999 29 + TSS region transcription start site region 8471
Tssr8472 1 127300004 to 127300013 9 + TSS region transcription start site region 8472
Tssr8473 1 127300417 to 127300449 32 + TSS region transcription start site region 8473
Tssr8474 1 127306296 to 127306314 18 + TSS region transcription start site region 8474
Tssr8475 1 127306544 to 127306594 50 + TSS region transcription start site region 8475
Tssr8476 1 127306605 to 127306616 11 + TSS region transcription start site region 8476
Tssr8477 1 127306624 to 127306637 13 + TSS region transcription start site region 8477
Tssr8478 1 127306656 to 127306667 11 + TSS region transcription start site region 8478
Tssr8479 1 127306676 to 127306696 20 + TSS region transcription start site region 8479
Tssr8480 1 127306706 to 127306752 46 + TSS region transcription start site region 8480
Tssr8481 1 127320127 to 127320166 39 + TSS region transcription start site region 8481
Gm23370 1 127331813 to 127331941 128 + snoRNA gene predicted gene, 23370
Gm23734 1 127375131 to 127375239 108 + snoRNA gene predicted gene, 23734
Gm38301 1 127406776 to 127407318 542 + unclassified gene predicted gene, 38301
Tssr13419 1 127425185 to 127425191 6 - TSS region transcription start site region 13419
D1Mit218.2 1 127440002 to 127440117 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 218.2
D1Mit218 1 127440110 to 127440254 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 218
Gm41947 1 127451772 to 127477965 26193 - lncRNA gene predicted gene, 41947
Tssr8482 1 127483029 to 127483033 4 + TSS region transcription start site region 8482
Tssr8483 1 127486724 to 127486750 26 + TSS region transcription start site region 8483
Tssr8484 1 127487616 to 127487617 1 + TSS region transcription start site region 8484
Tmem163 1 127490342 to 127679621 189279 - protein coding gene transmembrane protein 163
Tssr13420 1 127537439 to 127537446 7 - TSS region transcription start site region 13420
Tssr13421 1 127577833 to 127577834 1 - TSS region transcription start site region 13421
D1Mit495 1 127625442 to 127625561 119 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 495
Bglu12 1 127625442 to 127625561 119 QTL blood glucose level 12
Obq17 1 127625442 to 127625561 119 QTL obesity QTL 17
Cpgi689 1 127676670 to 127678421 1751 CpG island CpG island 689
Tssr13422 1 127677745 to 127677798 53 - TSS region transcription start site region 13422
Tssr13423 1 127677882 to 127677897 15 - TSS region transcription start site region 13423
Tssr13424 1 127677923 to 127677956 33 - TSS region transcription start site region 13424
Gm35993 1 127693611 to 127732964 39353 - lncRNA gene predicted gene, 35993
Tssr8485 1 127729405 to 127729418 13 + TSS region transcription start site region 8485
Acmsd 1 127729413 to 127767564 38151 + protein coding gene amino carboxymuconate semialdehyde decarboxylase
Tssr8486 1 127729430 to 127729435 5 + TSS region transcription start site region 8486
Tssr8487 1 127731348 to 127731382 34 + TSS region transcription start site region 8487
Tssr13425 1 127732525 to 127732556 31 - TSS region transcription start site region 13425
Tssr13426 1 127732557 to 127732572 15 - TSS region transcription start site region 13426
Tssr13427 1 127732577 to 127732629 52 - TSS region transcription start site region 13427
Tssr13428 1 127732931 to 127732977 46 - TSS region transcription start site region 13428
2900009J06Rik 1 127753617 to 127774054 20437 - antisense lncRNA gene RIKEN cDNA 2900009J06 gene
Tssr8488 1 127756751 to 127756763 12 + TSS region transcription start site region 8488
Cpgi690 1 127773829 to 127774937 1108 CpG island CpG island 690
Ccnt2 1 127774164 to 127804837 30673 + protein coding gene cyclin T2
Tssr8489 1 127774183 to 127774238 55 + TSS region transcription start site region 8489
Tssr8490 1 127774241 to 127774272 31 + TSS region transcription start site region 8490
Tssr8491 1 127783584 to 127783594 10 + TSS region transcription start site region 8491
Tssr8492 1 127793479 to 127793481 2 + TSS region transcription start site region 8492
Tssr8493 1 127797522 to 127797527 5 + TSS region transcription start site region 8493
Map3k19 1 127815253 to 127855031 39778 - protein coding gene mitogen-activated protein kinase kinase kinase 19
D1Ertd57e 1 127851557 to 127851767 210 DNA segment DNA segment, Chr 1, ERATO Doi 57, expressed
Tssr13429 1 127854996 to 127855030 34 - TSS region transcription start site region 13429
Tssr13430 1 127859029 to 127859045 16 - TSS region transcription start site region 13430
Cpgi691 1 127868619 to 127869251 632 CpG island CpG island 691
Tssr8494 1 127868771 to 127868780 9 + TSS region transcription start site region 8494
Rab3gap1 1 127868773 to 127943868 75095 + protein coding gene RAB3 GTPase activating protein subunit 1
Tssr8495 1 127868784 to 127868807 23 + TSS region transcription start site region 8495
Tssr13431 1 127896964 to 127896969 5 - TSS region transcription start site region 13431
Zranb3 1 127954184 to 128103047 148863 - protein coding gene zinc finger, RAN-binding domain containing 3
Gm28800 1 127961112 to 127965987 4875 + antisense lncRNA gene predicted gene 28800
Tssr13432 1 127976444 to 127976457 13 - TSS region transcription start site region 13432
Tssr13433 1 127976473 to 127976484 11 - TSS region transcription start site region 13433
Tssr13434 1 127976501 to 127976518 17 - TSS region transcription start site region 13434
Tssr8496 1 127978333 to 127978352 19 + TSS region transcription start site region 8496
Tssr8497 1 127978365 to 127978382 17 + TSS region transcription start site region 8497
Tssr8498 1 127978431 to 127978447 16 + TSS region transcription start site region 8498
Gm38248 1 127978905 to 127984687 5782 - unclassified gene predicted gene, 38248
Tssr8499 1 127985757 to 127985765 8 + TSS region transcription start site region 8499
Gm8283 1 128005489 to 128006453 964 - pseudogene predicted gene 8283
Tssr13435 1 128016153 to 128016189 36 - TSS region transcription start site region 13435
Tssr8500 1 128038522 to 128038525 3 + TSS region transcription start site region 8500
Rpl28-ps1 1 128038569 to 128038982 413 + pseudogene ribosomal protein L28, pseudogene 1
Tssr8501 1 128044480 to 128044487 7 + TSS region transcription start site region 8501
D1Mit393 1 128084233 to 128084377 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 393
Gm37625 1 128084460 to 128089331 4871 - unclassified gene predicted gene, 37625
Gm38026 1 128097591 to 128101470 3879 - unclassified gene predicted gene, 38026
Tssr13436 1 128102412 to 128102485 73 - TSS region transcription start site region 13436
Cpgi692 1 128102872 to 128104064 1192 CpG island CpG island 692
Tssr13437 1 128103016 to 128103053 37 - TSS region transcription start site region 13437
Tssr8502 1 128103297 to 128103311 14 + TSS region transcription start site region 8502
R3hdm1 1 128103301 to 128237736 134435 + protein coding gene R3H domain containing 1
Tssr8503 1 128103312 to 128103360 48 + TSS region transcription start site region 8503
Tssr8504 1 128103376 to 128103387 11 + TSS region transcription start site region 8504
Tssr8505 1 128104134 to 128104151 17 + TSS region transcription start site region 8505
Gm29383 1 128128410 to 128128889 479 - pseudogene predicted gene 29383
Tssr13438 1 128128914 to 128128927 13 - TSS region transcription start site region 13438
Gm37588 1 128132157 to 128134652 2495 + unclassified gene predicted gene, 37588
Tssr8506 1 128141917 to 128141933 16 + TSS region transcription start site region 8506
Tssr8507 1 128141940 to 128141968 28 + TSS region transcription start site region 8507
Tssr8508 1 128141973 to 128141990 17 + TSS region transcription start site region 8508
Tssr8509 1 128142863 to 128142871 8 + TSS region transcription start site region 8509
Tssr8510 1 128143353 to 128143359 6 + TSS region transcription start site region 8510
Gm37868 1 128143614 to 128146348 2734 + unclassified gene predicted gene, 37868
Tssr8511 1 128151232 to 128151279 47 + TSS region transcription start site region 8511
Tssr8512 1 128151806 to 128151834 28 + TSS region transcription start site region 8512
Tssr8513 1 128155631 to 128155633 2 + TSS region transcription start site region 8513
Gm37407 1 128163214 to 128164529 1315 + unclassified gene predicted gene, 37407
Tssr8514 1 128167929 to 128167941 12 + TSS region transcription start site region 8514
Tssr8515 1 128171652 to 128171657 5 + TSS region transcription start site region 8515
Tssr8516 1 128171788 to 128171820 32 + TSS region transcription start site region 8516
D1Ertd347e 1 128174508 to 128174754 246 DNA segment DNA segment, Chr 1, ERATO Doi 347, expressed
Tssr8517 1 128178918 to 128178932 14 + TSS region transcription start site region 8517
Tssr8518 1 128190388 to 128190403 15 + TSS region transcription start site region 8518
Tssr8519 1 128193730 to 128193733 3 + TSS region transcription start site region 8519
Tssr8520 1 128196990 to 128197006 16 + TSS region transcription start site region 8520
Tssr8521 1 128197672 to 128197676 4 + TSS region transcription start site region 8521
Mir128-1 1 128202361 to 128202430 69 + miRNA gene microRNA 128-1
Tssr8522 1 128202422 to 128202429 7 + TSS region transcription start site region 8522
Cpgi693 1 128243937 to 128244949 1012 CpG island CpG island 693
Ubxn4 1 128243964 to 128279378 35414 + protein coding gene UBX domain protein 4
Tssr8523 1 128244122 to 128244175 53 + TSS region transcription start site region 8523
Tssr8524 1 128244181 to 128244199 18 + TSS region transcription start site region 8524
Tssr8525 1 128244234 to 128244249 15 + TSS region transcription start site region 8525
Tssr8526 1 128244257 to 128244325 68 + TSS region transcription start site region 8526
Tssr8527 1 128244342 to 128244353 11 + TSS region transcription start site region 8527
Tssr8528 1 128244432 to 128244443 11 + TSS region transcription start site region 8528
Gm41949 1 128244559 to 128251119 6560 + lncRNA gene predicted gene, 41949
Tssr8529 1 128244584 to 128244593 9 + TSS region transcription start site region 8529
Tssr8530 1 128244756 to 128244761 5 + TSS region transcription start site region 8530
Tssr8531 1 128252195 to 128252218 23 + TSS region transcription start site region 8531
Tssr8532 1 128256181 to 128256203 22 + TSS region transcription start site region 8532
Tssr8533 1 128259439 to 128259468 29 + TSS region transcription start site region 8533
Tssr13439 1 128281016 to 128281020 4 - TSS region transcription start site region 13439
Lct 1 128284756 to 128328318 43562 - protein coding gene lactase
Tssr13440 1 128299505 to 128299524 19 - TSS region transcription start site region 13440
Tssr13441 1 128299589 to 128299634 45 - TSS region transcription start site region 13441
Tssr13442 1 128299953 to 128299987 34 - TSS region transcription start site region 13442
Tssr13443 1 128319098 to 128319114 16 - TSS region transcription start site region 13443
Tssr13444 1 128319220 to 128319238 18 - TSS region transcription start site region 13444
Tssr13445 1 128324323 to 128324327 4 - TSS region transcription start site region 13445
Tssr13446 1 128324497 to 128324502 5 - TSS region transcription start site region 13446
Tssr13447 1 128327749 to 128327755 6 - TSS region transcription start site region 13447
Tssr13448 1 128328311 to 128328326 15 - TSS region transcription start site region 13448
Mcm6 1 128331590 to 128359664 28074 - protein coding gene minichromosome maintenance complex component 6
Tssr13449 1 128343467 to 128343480 13 - TSS region transcription start site region 13449
Cpgi694 1 128359225 to 128359930 705 CpG island CpG island 694
Tssr13450 1 128359597 to 128359609 12 - TSS region transcription start site region 13450
Tssr13451 1 128359610 to 128359698 88 - TSS region transcription start site region 13451
Dars 1 128363707 to 128417368 53661 - protein coding gene aspartyl-tRNA synthetase
Tssr192 1 128373504 to 128373515 11 + TSS region transcription start site region 192
Tssr8534 1 128399359 to 128399383 24 + TSS region transcription start site region 8534
Tssr13452 1 128404573 to 128404577 4 - TSS region transcription start site region 13452
Tssr13453 1 128414023 to 128414028 5 - TSS region transcription start site region 13453
Cpgi695 1 128416690 to 128417558 868 CpG island CpG island 695
Tssr13454 1 128417221 to 128417230 9 - TSS region transcription start site region 13454
Tssr13455 1 128417235 to 128417246 11 - TSS region transcription start site region 13455
Tssr13456 1 128417272 to 128417283 11 - TSS region transcription start site region 13456
Tssr193 1 128417294 to 128417305 11 - TSS region transcription start site region 193
Tssr13457 1 128417316 to 128417350 34 - TSS region transcription start site region 13457
Tssr13458 1 128417352 to 128417384 32 - TSS region transcription start site region 13458
Tssr13459 1 128447272 to 128447284 12 - TSS region transcription start site region 13459
Cpgi696 1 128472492 to 128472668 176 CpG island CpG island 696
Gm23902 1 128490040 to 128490173 133 + snoRNA gene predicted gene, 23902
Gm29598 1 128493845 to 128494432 587 - pseudogene predicted gene 29598
Gm29597 1 128514810 to 128515117 307 - pseudogene predicted gene 29597
Gm25384 1 128515115 to 128515219 104 - snRNA gene predicted gene, 25384
Gm6170 1 128520073 to 128521460 1387 - pseudogene predicted gene 6170
Gm41950 1 128542355 to 128549406 7051 + lncRNA gene predicted gene, 41950