Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:125558620-127185799

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi685 1 125560169 to 125561567 1398 CpG island CpG island 685
Slc35f5 1 125560595 to 125595820 35225 + protein coding gene solute carrier family 35, member F5
Tssr8442 1 125561010 to 125561095 85 + TSS region transcription start site region 8442
Tssr8443 1 125561101 to 125561122 21 + TSS region transcription start site region 8443
Tssr13390 1 125561438 to 125561458 20 - TSS region transcription start site region 13390
Gm18444 1 125667988 to 125668616 628 - pseudogene predicted gene, 18444
D1Mit138 1 125668929 to 125669178 249 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 138
D1Mit138.1 1 125669023 to 125669187 164 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 138.1
Tssr8444 1 125676848 to 125676855 7 + TSS region transcription start site region 8444
Tssr8445 1 125676861 to 125676874 13 + TSS region transcription start site region 8445
Tssr8446 1 125676885 to 125676895 10 + TSS region transcription start site region 8446
Tssr8447 1 125676969 to 125677015 46 + TSS region transcription start site region 8447
Gpr39 1 125676996 to 125873862 196866 + protein coding gene G protein-coupled receptor 39
Tssr8448 1 125677020 to 125677075 55 + TSS region transcription start site region 8448
Tssr189 1 125677095 to 125677102 7 + TSS region transcription start site region 189
Tssr8449 1 125677113 to 125677122 9 + TSS region transcription start site region 8449
Tssr8450 1 125677131 to 125677142 11 + TSS region transcription start site region 8450
Tssr8451 1 125677156 to 125677168 12 + TSS region transcription start site region 8451
Tssr8452 1 125677196 to 125677209 13 + TSS region transcription start site region 8452
Tssr8453 1 125677218 to 125677233 15 + TSS region transcription start site region 8453
Tssr8454 1 125677287 to 125677302 15 + TSS region transcription start site region 8454
Tssr8455 1 125677676 to 125677687 11 + TSS region transcription start site region 8455
D1Mit93 1 125685026 to 125685154 128 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 93
Tssr8456 1 125780027 to 125780031 4 + TSS region transcription start site region 8456
Gm41943 1 125833973 to 125841726 7753 - lncRNA gene predicted gene, 41943
Tssr8457 1 125839960 to 125839972 12 + TSS region transcription start site region 8457
AI853363 1 125867621 to 125868218 597 unclassified gene expressed sequence AI853363
Lypd1 1 125867622 to 125913101 45479 - protein coding gene Ly6/Plaur domain containing 1
Cpgi686 1 125911169 to 125912846 1677 CpG island CpG island 686
Tssr13391 1 125912160 to 125912199 39 - TSS region transcription start site region 13391
Tssr13392 1 125913103 to 125913118 15 - TSS region transcription start site region 13392
Tssr13393 1 125913130 to 125913149 19 - TSS region transcription start site region 13393
Nckap5 1 125913620 to 126830799 917179 - protein coding gene NCK-associated protein 5
Gm37161 1 125919266 to 125921962 2696 - unclassified gene predicted gene, 37161
Tssr13394 1 125989249 to 125989252 3 - TSS region transcription start site region 13394
D1Mit192 1 125992919 to 125993052 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 192
Gm35562 1 126046689 to 126102537 55848 + lncRNA gene predicted gene, 35562
Gm37936 1 126070140 to 126071461 1321 - unclassified gene predicted gene, 37936
Tssr13395 1 126090477 to 126090479 2 - TSS region transcription start site region 13395
Tssr13396 1 126092513 to 126092517 4 - TSS region transcription start site region 13396
Tssr13397 1 126173789 to 126173791 2 - TSS region transcription start site region 13397
D1Mit94 1 126180271 to 126180424 153 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 94
D1Mit96 1 126246915 to 126247045 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 96
Tssr13398 1 126322425 to 126322428 3 - TSS region transcription start site region 13398
Gm38177 1 126323635 to 126324674 1039 - unclassified gene predicted gene, 38177
D1Mit91 1 126458633 to 126458780 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 91
Leusq5 1 126458780 to 98547060 -27911720 QTL leucocytosis susceptibility QTL 5
Leusq2 1 126458780 to 80267876 -46190904 QTL leucocytosis susceptibility QTL 2
Tssr13399 1 126470841 to 126470867 26 - TSS region transcription start site region 13399
Tssr13400 1 126483684 to 126483739 55 - TSS region transcription start site region 13400
Cpgi687 1 126492528 to 126492831 303 CpG island CpG island 687
Tssr13401 1 126492683 to 126492724 41 - TSS region transcription start site region 13401
Tssr13402 1 126492795 to 126492804 9 - TSS region transcription start site region 13402
Tssr13403 1 126492840 to 126492848 8 - TSS region transcription start site region 13403
Tssr13404 1 126492863 to 126492874 11 - TSS region transcription start site region 13404
Tssr13405 1 126492900 to 126492951 51 - TSS region transcription start site region 13405
A130075O10Rik 1 126515000 to 126517479 2479 unclassified gene RIKEN cDNA A130075O10 gene
D1Mit139 1 126517333 to 126517573 240 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 139
Sle17 1 126517573 to 39093727 -87423846 QTL systematic lupus erythematosus susceptibility 17
Aaaq1 1 126568206 to 126568206 0 QTL aortic arch angle QTL 1
Tssr8458 1 126573934 to 126573939 5 + TSS region transcription start site region 8458
D1Mit98 1 126583526 to 126583676 150 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 98
Tssr13406 1 126604672 to 126604732 60 - TSS region transcription start site region 13406
Tssr13407 1 126626302 to 126626306 4 - TSS region transcription start site region 13407
Tssr13408 1 126694096 to 126694100 4 - TSS region transcription start site region 13408
Melm1 1 126710525 to 126710742 217 QTL melanoma modifier 1
D1Mit494 1 126710525 to 126710742 217 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 494
Tssr13409 1 126738153 to 126738163 10 - TSS region transcription start site region 13409
Tssr13410 1 126738167 to 126738230 63 - TSS region transcription start site region 13410
Tssr190 1 126824742 to 126824747 5 - TSS region transcription start site region 190
Tssr13411 1 126830371 to 126830389 18 - TSS region transcription start site region 13411
Tssr13412 1 126830428 to 126830437 9 - TSS region transcription start site region 13412
Tssr13413 1 126830733 to 126830778 45 - TSS region transcription start site region 13413
Tssr13414 1 126830786 to 126830798 12 - TSS region transcription start site region 13414
Tssr8459 1 126844446 to 126844448 2 + TSS region transcription start site region 8459
4930599A14Rik 1 126872203 to 126876615 4412 - lincRNA gene RIKEN cDNA 4930599A14 gene
Tssr8460 1 126992786 to 126992791 5 + TSS region transcription start site region 8460
Gm41945 1 127016342 to 127023311 6969 - lncRNA gene predicted gene, 41945
Gm5261 1 127049984 to 127050696 712 - pseudogene predicted gene 5261