Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:125413620-127330799

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Actr3 1 125392905 to 125435727 42822 - protein coding gene ARP3 actin-related protein 3
Tssr13377 1 125414723 to 125414736 13 - TSS region transcription start site region 13377
Tssr13378 1 125421989 to 125421997 8 - TSS region transcription start site region 13378
Tssr13379 1 125422161 to 125422176 15 - TSS region transcription start site region 13379
Tssr13380 1 125434526 to 125434537 11 - TSS region transcription start site region 13380
Tssr188 1 125434584 to 125434609 25 - TSS region transcription start site region 188
Cpgi684 1 125434656 to 125436152 1496 CpG island CpG island 684
Tssr8437 1 125434771 to 125434785 14 + TSS region transcription start site region 8437
Tssr13381 1 125434776 to 125434790 14 - TSS region transcription start site region 13381
Tssr8438 1 125434883 to 125434894 11 + TSS region transcription start site region 8438
Tssr13382 1 125435432 to 125435444 12 - TSS region transcription start site region 13382
Tssr13383 1 125435474 to 125435532 58 - TSS region transcription start site region 13383
Tssr13384 1 125435535 to 125435557 22 - TSS region transcription start site region 13384
Tssr13385 1 125435661 to 125435688 27 - TSS region transcription start site region 13385
Tssr13386 1 125435694 to 125435710 16 - TSS region transcription start site region 13386
Tssr13387 1 125435744 to 125435753 9 - TSS region transcription start site region 13387
Tssr13388 1 125435891 to 125435900 9 - TSS region transcription start site region 13388
Tssr8439 1 125435986 to 125436011 25 + TSS region transcription start site region 8439
Tssr8440 1 125438222 to 125438256 34 + TSS region transcription start site region 8440
Tssr8441 1 125444564 to 125444571 7 + TSS region transcription start site region 8441
Gm28706 1 125444567 to 125447398 2831 + lincRNA gene predicted gene 28706
Tssr13389 1 125450363 to 125450368 5 - TSS region transcription start site region 13389
Cpgi685 1 125560169 to 125561567 1398 CpG island CpG island 685
Slc35f5 1 125560595 to 125595820 35225 + protein coding gene solute carrier family 35, member F5
Tssr8442 1 125561010 to 125561095 85 + TSS region transcription start site region 8442
Tssr8443 1 125561101 to 125561122 21 + TSS region transcription start site region 8443
Tssr13390 1 125561438 to 125561458 20 - TSS region transcription start site region 13390
Gm18444 1 125667988 to 125668616 628 - pseudogene predicted gene, 18444
D1Mit138 1 125668929 to 125669178 249 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 138
D1Mit138.1 1 125669023 to 125669187 164 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 138.1
Tssr8444 1 125676848 to 125676855 7 + TSS region transcription start site region 8444
Tssr8445 1 125676861 to 125676874 13 + TSS region transcription start site region 8445
Tssr8446 1 125676885 to 125676895 10 + TSS region transcription start site region 8446
Tssr8447 1 125676969 to 125677015 46 + TSS region transcription start site region 8447
Gpr39 1 125676996 to 125873862 196866 + protein coding gene G protein-coupled receptor 39
Tssr8448 1 125677020 to 125677075 55 + TSS region transcription start site region 8448
Tssr189 1 125677095 to 125677102 7 + TSS region transcription start site region 189
Tssr8449 1 125677113 to 125677122 9 + TSS region transcription start site region 8449
Tssr8450 1 125677131 to 125677142 11 + TSS region transcription start site region 8450
Tssr8451 1 125677156 to 125677168 12 + TSS region transcription start site region 8451
Tssr8452 1 125677196 to 125677209 13 + TSS region transcription start site region 8452
Tssr8453 1 125677218 to 125677233 15 + TSS region transcription start site region 8453
Tssr8454 1 125677287 to 125677302 15 + TSS region transcription start site region 8454
Tssr8455 1 125677676 to 125677687 11 + TSS region transcription start site region 8455
D1Mit93 1 125685026 to 125685154 128 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 93
Tssr8456 1 125780027 to 125780031 4 + TSS region transcription start site region 8456
Gm41943 1 125833973 to 125841726 7753 - lncRNA gene predicted gene, 41943
Tssr8457 1 125839960 to 125839972 12 + TSS region transcription start site region 8457
AI853363 1 125867621 to 125868218 597 unclassified gene expressed sequence AI853363
Lypd1 1 125867622 to 125913101 45479 - protein coding gene Ly6/Plaur domain containing 1
Cpgi686 1 125911169 to 125912846 1677 CpG island CpG island 686
Tssr13391 1 125912160 to 125912199 39 - TSS region transcription start site region 13391
Tssr13392 1 125913103 to 125913118 15 - TSS region transcription start site region 13392
Tssr13393 1 125913130 to 125913149 19 - TSS region transcription start site region 13393
Nckap5 1 125913620 to 126830799 917179 - protein coding gene NCK-associated protein 5
Gm37161 1 125919266 to 125921962 2696 - unclassified gene predicted gene, 37161
Tssr13394 1 125989249 to 125989252 3 - TSS region transcription start site region 13394
D1Mit192 1 125992919 to 125993052 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 192
Gm35562 1 126046689 to 126102537 55848 + lncRNA gene predicted gene, 35562
Gm37936 1 126070140 to 126071461 1321 - unclassified gene predicted gene, 37936
Tssr13395 1 126090477 to 126090479 2 - TSS region transcription start site region 13395
Tssr13396 1 126092513 to 126092517 4 - TSS region transcription start site region 13396
Tssr13397 1 126173789 to 126173791 2 - TSS region transcription start site region 13397
D1Mit94 1 126180271 to 126180424 153 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 94
D1Mit96 1 126246915 to 126247045 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 96
Tssr13398 1 126322425 to 126322428 3 - TSS region transcription start site region 13398
Gm38177 1 126323635 to 126324674 1039 - unclassified gene predicted gene, 38177
D1Mit91 1 126458633 to 126458780 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 91
Leusq5 1 126458780 to 98547060 -27911720 QTL leucocytosis susceptibility QTL 5
Leusq2 1 126458780 to 80267876 -46190904 QTL leucocytosis susceptibility QTL 2
Tssr13399 1 126470841 to 126470867 26 - TSS region transcription start site region 13399
Tssr13400 1 126483684 to 126483739 55 - TSS region transcription start site region 13400
Cpgi687 1 126492528 to 126492831 303 CpG island CpG island 687
Tssr13401 1 126492683 to 126492724 41 - TSS region transcription start site region 13401
Tssr13402 1 126492795 to 126492804 9 - TSS region transcription start site region 13402
Tssr13403 1 126492840 to 126492848 8 - TSS region transcription start site region 13403
Tssr13404 1 126492863 to 126492874 11 - TSS region transcription start site region 13404
Tssr13405 1 126492900 to 126492951 51 - TSS region transcription start site region 13405
A130075O10Rik 1 126515000 to 126517479 2479 unclassified gene RIKEN cDNA A130075O10 gene
D1Mit139 1 126517333 to 126517573 240 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 139
Sle17 1 126517573 to 39093727 -87423846 QTL systematic lupus erythematosus susceptibility 17
Aaaq1 1 126568206 to 126568206 0 QTL aortic arch angle QTL 1
Tssr8458 1 126573934 to 126573939 5 + TSS region transcription start site region 8458
D1Mit98 1 126583526 to 126583676 150 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 98
Tssr13406 1 126604672 to 126604732 60 - TSS region transcription start site region 13406
Tssr13407 1 126626302 to 126626306 4 - TSS region transcription start site region 13407
Tssr13408 1 126694096 to 126694100 4 - TSS region transcription start site region 13408
Melm1 1 126710525 to 126710742 217 QTL melanoma modifier 1
D1Mit494 1 126710525 to 126710742 217 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 494
Tssr13409 1 126738153 to 126738163 10 - TSS region transcription start site region 13409
Tssr13410 1 126738167 to 126738230 63 - TSS region transcription start site region 13410
Tssr190 1 126824742 to 126824747 5 - TSS region transcription start site region 190
Tssr13411 1 126830371 to 126830389 18 - TSS region transcription start site region 13411
Tssr13412 1 126830428 to 126830437 9 - TSS region transcription start site region 13412
Tssr13413 1 126830733 to 126830778 45 - TSS region transcription start site region 13413
Tssr13414 1 126830786 to 126830798 12 - TSS region transcription start site region 13414
Tssr8459 1 126844446 to 126844448 2 + TSS region transcription start site region 8459
4930599A14Rik 1 126872203 to 126876615 4412 - lincRNA gene RIKEN cDNA 4930599A14 gene
Tssr8460 1 126992786 to 126992791 5 + TSS region transcription start site region 8460
Gm41945 1 127016342 to 127023311 6969 - lncRNA gene predicted gene, 41945
Gm5261 1 127049984 to 127050696 712 - pseudogene predicted gene 5261
Cpgi688 1 127204827 to 127206649 1822 CpG island CpG island 688
Tssr8461 1 127204989 to 127205051 62 + TSS region transcription start site region 8461
Mgat5 1 127205015 to 127488336 283321 + protein coding gene mannoside acetylglucosaminyltransferase 5
Tssr8462 1 127205197 to 127205294 97 + TSS region transcription start site region 8462
Tssr8463 1 127205299 to 127205319 20 + TSS region transcription start site region 8463
Tssr8464 1 127205347 to 127205405 58 + TSS region transcription start site region 8464
Tssr13415 1 127206061 to 127206082 21 - TSS region transcription start site region 13415
Tssr191 1 127206585 to 127206623 38 + TSS region transcription start site region 191
Tssr13416 1 127207266 to 127207272 6 - TSS region transcription start site region 13416
Tssr8465 1 127209744 to 127209748 4 + TSS region transcription start site region 8465
Tssr8466 1 127213331 to 127213362 31 + TSS region transcription start site region 8466
Tssr8467 1 127213412 to 127213430 18 + TSS region transcription start site region 8467
Tssr8468 1 127228609 to 127228617 8 + TSS region transcription start site region 8468
Tssr8469 1 127228660 to 127228670 10 + TSS region transcription start site region 8469
Gm37772 1 127242091 to 127243484 1393 + unclassified gene predicted gene, 37772
Tssr13417 1 127242161 to 127242190 29 - TSS region transcription start site region 13417
Tssr13418 1 127242244 to 127242274 30 - TSS region transcription start site region 13418
Gm37510 1 127270524 to 127275285 4761 + unclassified gene predicted gene, 37510
Tssr8470 1 127273624 to 127273635 11 + TSS region transcription start site region 8470
Gm8451 1 127282662 to 127283108 446 - pseudogene predicted gene 8451
D1Jcs10 1 127291914 to 127292218 304 DNA segment DNA segment, Chr 1, John C. Schimenti 10
Tssr8471 1 127299970 to 127299999 29 + TSS region transcription start site region 8471
Tssr8472 1 127300004 to 127300013 9 + TSS region transcription start site region 8472
Tssr8473 1 127300417 to 127300449 32 + TSS region transcription start site region 8473
Tssr8474 1 127306296 to 127306314 18 + TSS region transcription start site region 8474
Tssr8475 1 127306544 to 127306594 50 + TSS region transcription start site region 8475
Tssr8476 1 127306605 to 127306616 11 + TSS region transcription start site region 8476
Tssr8477 1 127306624 to 127306637 13 + TSS region transcription start site region 8477
Tssr8478 1 127306656 to 127306667 11 + TSS region transcription start site region 8478
Tssr8479 1 127306676 to 127306696 20 + TSS region transcription start site region 8479
Tssr8480 1 127306706 to 127306752 46 + TSS region transcription start site region 8480
Tssr8481 1 127320127 to 127320166 39 + TSS region transcription start site region 8481