Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:124782816-126022839

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28928 1 124505757 to 124846039 340282 - lincRNA gene predicted gene 28928
Tssr13361 1 124783799 to 124783821 22 - TSS region transcription start site region 13361
Tssr13362 1 124791544 to 124791591 47 - TSS region transcription start site region 13362
Tssr13363 1 124820495 to 124820532 37 - TSS region transcription start site region 13363
Gm37717 1 124824702 to 124827728 3026 - unclassified gene predicted gene, 37717
Tssr13364 1 124830700 to 124830748 48 - TSS region transcription start site region 13364
Tssr13365 1 124845894 to 124845949 55 - TSS region transcription start site region 13365
Tssr13366 1 124845960 to 124845971 11 - TSS region transcription start site region 13366
Tssr13367 1 124846006 to 124846021 15 - TSS region transcription start site region 13367
Tssr13368 1 124846023 to 124846026 3 - TSS region transcription start site region 13368
Tssr13369 1 124846031 to 124846042 11 - TSS region transcription start site region 13369
Tssr13370 1 124846068 to 124846075 7 - TSS region transcription start site region 13370
Tssr13371 1 124846084 to 124846091 7 - TSS region transcription start site region 13371
Tssr13372 1 124846115 to 124846128 13 - TSS region transcription start site region 13372
Gm35355 1 124846122 to 124858524 12402 + lncRNA gene predicted gene, 35355
D1Mit158 1 125023544 to 125023673 129 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 158
Tssr8434 1 125174884 to 125174896 12 + TSS region transcription start site region 8434
Tssr8435 1 125174903 to 125174924 21 + TSS region transcription start site region 8435
Tssr8436 1 125174925 to 125174932 7 + TSS region transcription start site region 8436
D1Mit92 1 125188888 to 125189037 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 92
1700121L03Rik 1 125190282 to 125197455 7173 - lincRNA gene RIKEN cDNA 1700121L03 gene
Tssr13373 1 125197451 to 125197489 38 - TSS region transcription start site region 13373
D1Mit95 1 125221421 to 125221610 189 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 95
D1Mit421 1 125274130 to 125274300 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 421
D1Mit421.1 1 125274282 to 125274454 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 421.1
Actr3 1 125392905 to 125435727 42822 - protein coding gene ARP3 actin-related protein 3
Tssr13374 1 125393766 to 125393777 11 - TSS region transcription start site region 13374
Tssr13375 1 125396580 to 125396593 13 - TSS region transcription start site region 13375
Tssr13376 1 125402816 to 125402839 23 - TSS region transcription start site region 13376
Tssr13377 1 125414723 to 125414736 13 - TSS region transcription start site region 13377
Tssr13378 1 125421989 to 125421997 8 - TSS region transcription start site region 13378
Tssr13379 1 125422161 to 125422176 15 - TSS region transcription start site region 13379
Tssr13380 1 125434526 to 125434537 11 - TSS region transcription start site region 13380
Tssr188 1 125434584 to 125434609 25 - TSS region transcription start site region 188
Cpgi684 1 125434656 to 125436152 1496 CpG island CpG island 684
Tssr8437 1 125434771 to 125434785 14 + TSS region transcription start site region 8437
Tssr13381 1 125434776 to 125434790 14 - TSS region transcription start site region 13381
Tssr8438 1 125434883 to 125434894 11 + TSS region transcription start site region 8438
Tssr13382 1 125435432 to 125435444 12 - TSS region transcription start site region 13382
Tssr13383 1 125435474 to 125435532 58 - TSS region transcription start site region 13383
Tssr13384 1 125435535 to 125435557 22 - TSS region transcription start site region 13384
Tssr13385 1 125435661 to 125435688 27 - TSS region transcription start site region 13385
Tssr13386 1 125435694 to 125435710 16 - TSS region transcription start site region 13386
Tssr13387 1 125435744 to 125435753 9 - TSS region transcription start site region 13387
Tssr13388 1 125435891 to 125435900 9 - TSS region transcription start site region 13388
Tssr8439 1 125435986 to 125436011 25 + TSS region transcription start site region 8439
Tssr8440 1 125438222 to 125438256 34 + TSS region transcription start site region 8440
Tssr8441 1 125444564 to 125444571 7 + TSS region transcription start site region 8441
Gm28706 1 125444567 to 125447398 2831 + lincRNA gene predicted gene 28706
Tssr13389 1 125450363 to 125450368 5 - TSS region transcription start site region 13389
Cpgi685 1 125560169 to 125561567 1398 CpG island CpG island 685
Slc35f5 1 125560595 to 125595820 35225 + protein coding gene solute carrier family 35, member F5
Tssr8442 1 125561010 to 125561095 85 + TSS region transcription start site region 8442
Tssr8443 1 125561101 to 125561122 21 + TSS region transcription start site region 8443
Tssr13390 1 125561438 to 125561458 20 - TSS region transcription start site region 13390
Gm18444 1 125667988 to 125668616 628 - pseudogene predicted gene, 18444
D1Mit138 1 125668929 to 125669178 249 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 138
D1Mit138.1 1 125669023 to 125669187 164 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 138.1
Tssr8444 1 125676848 to 125676855 7 + TSS region transcription start site region 8444
Tssr8445 1 125676861 to 125676874 13 + TSS region transcription start site region 8445
Tssr8446 1 125676885 to 125676895 10 + TSS region transcription start site region 8446
Tssr8447 1 125676969 to 125677015 46 + TSS region transcription start site region 8447
Gpr39 1 125676996 to 125873862 196866 + protein coding gene G protein-coupled receptor 39
Tssr8448 1 125677020 to 125677075 55 + TSS region transcription start site region 8448
Tssr189 1 125677095 to 125677102 7 + TSS region transcription start site region 189
Tssr8449 1 125677113 to 125677122 9 + TSS region transcription start site region 8449
Tssr8450 1 125677131 to 125677142 11 + TSS region transcription start site region 8450
Tssr8451 1 125677156 to 125677168 12 + TSS region transcription start site region 8451
Tssr8452 1 125677196 to 125677209 13 + TSS region transcription start site region 8452
Tssr8453 1 125677218 to 125677233 15 + TSS region transcription start site region 8453
Tssr8454 1 125677287 to 125677302 15 + TSS region transcription start site region 8454
Tssr8455 1 125677676 to 125677687 11 + TSS region transcription start site region 8455
D1Mit93 1 125685026 to 125685154 128 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 93
Tssr8456 1 125780027 to 125780031 4 + TSS region transcription start site region 8456
Gm41943 1 125833973 to 125841726 7753 - lncRNA gene predicted gene, 41943
Tssr8457 1 125839960 to 125839972 12 + TSS region transcription start site region 8457
AI853363 1 125867621 to 125868218 597 unclassified gene expressed sequence AI853363
Lypd1 1 125867622 to 125913101 45479 - protein coding gene Ly6/Plaur domain containing 1
Cpgi686 1 125911169 to 125912846 1677 CpG island CpG island 686
Tssr13391 1 125912160 to 125912199 39 - TSS region transcription start site region 13391
Tssr13392 1 125913103 to 125913118 15 - TSS region transcription start site region 13392
Tssr13393 1 125913130 to 125913149 19 - TSS region transcription start site region 13393
Nckap5 1 125913620 to 126830799 917179 - protein coding gene NCK-associated protein 5
Gm37161 1 125919266 to 125921962 2696 - unclassified gene predicted gene, 37161
Tssr13394 1 125989249 to 125989252 3 - TSS region transcription start site region 13394
D1Mit192 1 125992919 to 125993052 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 192