Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:121356067-121581460

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46080 1 121358758 to 121359182 424 - protein coding gene predicted gene, 46080
2210011K15Rik 1 121359531 to 121360220 689 - lincRNA gene RIKEN cDNA 2210011K15 gene
Tssr13291 1 121359863 to 121359876 13 - TSS region transcription start site region 13291
Gm35243 1 121427608 to 121431010 3402 - lncRNA gene predicted gene, 35243
Tssr13292 1 121430690 to 121430700 10 - TSS region transcription start site region 13292
Cpgi679 1 121430929 to 121431836 907 CpG island CpG island 679
Tssr13293 1 121430966 to 121430984 18 - TSS region transcription start site region 13293
Tssr13294 1 121430989 to 121431012 23 - TSS region transcription start site region 13294
Tssr13295 1 121431016 to 121431027 11 - TSS region transcription start site region 13295
Tssr8424 1 121431051 to 121431124 73 + TSS region transcription start site region 8424
Ccdc93 1 121431067 to 121506460 75393 + protein coding gene coiled-coil domain containing 93
Tssr8425 1 121431128 to 121431152 24 + TSS region transcription start site region 8425
Tssr8426 1 121462234 to 121462247 13 + TSS region transcription start site region 8426
Tssr8427 1 121486943 to 121486948 5 + TSS region transcription start site region 8427
Tssr8428 1 121486949 to 121486961 12 + TSS region transcription start site region 8428
Tssr8429 1 121486970 to 121486980 10 + TSS region transcription start site region 8429
Gm15392 1 121489296 to 121493203 3907 - antisense lncRNA gene predicted gene 15392
Tssr8430 1 121495409 to 121495420 11 + TSS region transcription start site region 8430
Tssr8431 1 121495865 to 121495895 30 + TSS region transcription start site region 8431
Gm15393 1 121507585 to 121507803 218 - pseudogene predicted gene 15393
Htr5b 1 121509842 to 121528465 18623 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 5B
Gm8217 1 121520583 to 121521047 464 + pseudogene predicted gene 8217
Cpgi680 1 121527250 to 121528656 1406 CpG island CpG island 680
Ddx18 1 121553835 to 121567980 14145 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
Cpgi681 1 121567542 to 121568280 738 CpG island CpG island 681
Tssr13296 1 121567635 to 121567656 21 - TSS region transcription start site region 13296
Tssr13297 1 121567657 to 121567726 69 - TSS region transcription start site region 13297
Tssr13298 1 121567895 to 121567905 10 - TSS region transcription start site region 13298
Tssr13299 1 121567906 to 121567952 46 - TSS region transcription start site region 13299