Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:120637127-124077335

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2610027F03Rik 1 120621740 to 120690403 68663 + lincRNA gene RIKEN cDNA 2610027F03 gene
Tssr8420 1 120644681 to 120644690 9 + TSS region transcription start site region 8420
D1Mit419 1 120678643 to 120678790 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 419
Gm29346 1 120758443 to 120763565 5122 + lincRNA gene predicted gene 29346
D1Mit420 1 120776803 to 120776898 95 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 420
Gm29345 1 120816500 to 120836997 20497 + lincRNA gene predicted gene 29345
Gm29344 1 120825247 to 120825456 209 - pseudogene predicted gene 29344
Gm29348 1 120847989 to 120857486 9497 - lincRNA gene predicted gene 29348
Gm29347 1 120856674 to 120858010 1336 + lincRNA gene predicted gene 29347
Gm34584 1 120857644 to 120874294 16650 + lncRNA gene predicted gene, 34584
Gm37043 1 120868996 to 120872100 3104 + unclassified gene predicted gene, 37043
D1Mit470 1 120876202 to 120876343 141 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-470
Gm34641 1 120929707 to 120957659 27952 - lncRNA gene predicted gene, 34641
Gm34698 1 120969985 to 120993672 23687 - lncRNA gene predicted gene, 34698
Tssr184 1 120982999 to 120983001 2 + TSS region transcription start site region 184
Tssr13277 1 120993654 to 120993685 31 - TSS region transcription start site region 13277
Tssr8421 1 121035277 to 121035286 9 + TSS region transcription start site region 8421
Tssr8422 1 121049829 to 121049836 7 + TSS region transcription start site region 8422
Tssr8423 1 121087383 to 121087424 41 + TSS region transcription start site region 8423
Celrr 1 121087405 to 121120975 33570 + lincRNA gene cerebellum expressed regulatory RNA
Gm46155 1 121116976 to 121148039 31063 - lncRNA gene predicted gene, 46155
D1Mit390 1 121171745 to 121171867 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 390
Cpgi677 1 121177880 to 121178288 408 CpG island CpG island 677
Gm41940 1 121221797 to 121244519 22722 - lncRNA gene predicted gene, 41940
Gm29359 1 121224276 to 121227526 3250 + lincRNA gene predicted gene 29359
Gm38283 1 121300137 to 121300831 694 - unclassified gene predicted gene, 38283
Insig2 1 121304353 to 121332589 28236 - protein coding gene insulin induced gene 2
Tssr185 1 121307363 to 121307364 1 + TSS region transcription start site region 185
Tssr13278 1 121307947 to 121307973 26 - TSS region transcription start site region 13278
Cpgi678 1 121327383 to 121328243 860 CpG island CpG island 678
Tssr13279 1 121327651 to 121327657 6 - TSS region transcription start site region 13279
Tssr13280 1 121327672 to 121327690 18 - TSS region transcription start site region 13280
Tssr13281 1 121327734 to 121327768 34 - TSS region transcription start site region 13281
Tssr13282 1 121327776 to 121327803 27 - TSS region transcription start site region 13282
Tssr13283 1 121328027 to 121328044 17 - TSS region transcription start site region 13283
Gm37174 1 121328092 to 121331149 3057 + unclassified gene predicted gene, 37174
Tssr13284 1 121332515 to 121332538 23 - TSS region transcription start site region 13284
Tssr13285 1 121332545 to 121332568 23 - TSS region transcription start site region 13285
Tssr13286 1 121332571 to 121332587 16 - TSS region transcription start site region 13286
Tssr13287 1 121332662 to 121332671 9 - TSS region transcription start site region 13287
Tssr13288 1 121346170 to 121346181 11 - TSS region transcription start site region 13288
Tssr13289 1 121346193 to 121346215 22 - TSS region transcription start site region 13289
Tssr13290 1 121346222 to 121346227 5 - TSS region transcription start site region 13290
D1Ertd576e 1 121351117 to 121351336 219 DNA segment DNA segment, Chr 1, ERATO Doi 576, expressed
Gm46080 1 121358758 to 121359182 424 - protein coding gene predicted gene, 46080
2210011K15Rik 1 121359531 to 121360220 689 - lincRNA gene RIKEN cDNA 2210011K15 gene
Tssr13291 1 121359863 to 121359876 13 - TSS region transcription start site region 13291
Gm35243 1 121427608 to 121431010 3402 - lncRNA gene predicted gene, 35243
Tssr13292 1 121430690 to 121430700 10 - TSS region transcription start site region 13292
Cpgi679 1 121430929 to 121431836 907 CpG island CpG island 679
Tssr13293 1 121430966 to 121430984 18 - TSS region transcription start site region 13293
Tssr13294 1 121430989 to 121431012 23 - TSS region transcription start site region 13294
Tssr13295 1 121431016 to 121431027 11 - TSS region transcription start site region 13295
Tssr8424 1 121431051 to 121431124 73 + TSS region transcription start site region 8424
Ccdc93 1 121431067 to 121506460 75393 + protein coding gene coiled-coil domain containing 93
Tssr8425 1 121431128 to 121431152 24 + TSS region transcription start site region 8425
Tssr8426 1 121462234 to 121462247 13 + TSS region transcription start site region 8426
Tssr8427 1 121486943 to 121486948 5 + TSS region transcription start site region 8427
Tssr8428 1 121486949 to 121486961 12 + TSS region transcription start site region 8428
Tssr8429 1 121486970 to 121486980 10 + TSS region transcription start site region 8429
Gm15392 1 121489296 to 121493203 3907 - antisense lncRNA gene predicted gene 15392
Tssr8430 1 121495409 to 121495420 11 + TSS region transcription start site region 8430
Tssr8431 1 121495865 to 121495895 30 + TSS region transcription start site region 8431
Gm15393 1 121507585 to 121507803 218 - pseudogene predicted gene 15393
Htr5b 1 121509842 to 121528465 18623 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 5B
Gm8217 1 121520583 to 121521047 464 + pseudogene predicted gene 8217
Cpgi680 1 121527250 to 121528656 1406 CpG island CpG island 680
Ddx18 1 121553835 to 121567980 14145 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
Cpgi681 1 121567542 to 121568280 738 CpG island CpG island 681
Tssr13296 1 121567635 to 121567656 21 - TSS region transcription start site region 13296
Tssr13297 1 121567657 to 121567726 69 - TSS region transcription start site region 13297
Tssr13298 1 121567895 to 121567905 10 - TSS region transcription start site region 13298
Tssr13299 1 121567906 to 121567952 46 - TSS region transcription start site region 13299
Gm28591 1 121645667 to 121645849 182 - pseudogene predicted gene 28591
Tssr8432 1 121706511 to 121706527 16 + TSS region transcription start site region 8432
Gm37920 1 121706515 to 121707263 748 + unclassified gene predicted gene, 37920
Gm15394 1 121969217 to 121970524 1307 - pseudogene predicted gene 15394
D1Mit343 1 121990010 to 121990128 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 343
D1Mit342 1 121990027 to 121990147 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 342
Gm8392 1 122190221 to 122191052 831 + pseudogene predicted gene 8392
D1Mit471 1 122200178 to 122200290 112 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-471
Gm26472 1 122201459 to 122201541 82 + miRNA gene predicted gene, 26472
Gm28590 1 122205145 to 122252180 47035 + lincRNA gene predicted gene 28590
Cpgi682 1 122357127 to 122357335 208 CpG island CpG island 682
Tssr13300 1 122357224 to 122357246 22 - TSS region transcription start site region 13300
Tssr186 1 122357301 to 122357328 27 - TSS region transcription start site region 186
Gm24547 1 122510549 to 122510697 148 + snRNA gene predicted gene, 24547
Gm36982 1 122521749 to 122522876 1127 + unclassified gene predicted gene, 36982
Gm25771 1 122553173 to 122553316 143 + snoRNA gene predicted gene, 25771
Gm29192 1 122810306 to 122810682 376 + pseudogene predicted gene 29192
Gm37970 1 122866042 to 122867773 1731 + unclassified gene predicted gene, 37970
D1Mit444 1 123074764 to 123074876 112 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 444
Gm8403 1 123147924 to 123149185 1261 - pseudogene predicted gene 8403
Gm28911 1 123205149 to 123205265 116 + pseudogene predicted gene 28911
Gm20058 1 123274139 to 123276771 2632 + pseudogene predicted gene, 20058
Gm28912 1 123287574 to 123287807 233 + pseudogene predicted gene 28912
Dpp10 1 123321471 to 124045559 724088 - protein coding gene dipeptidylpeptidase 10
Tssr13301 1 123340933 to 123340980 47 - TSS region transcription start site region 13301
Gm37478 1 123363740 to 123367234 3494 - unclassified gene predicted gene, 37478
Gm37221 1 123371172 to 123374178 3006 - unclassified gene predicted gene, 37221
Gm24791 1 123389801 to 123389931 130 - snoRNA gene predicted gene, 24791
Gm37066 1 123391111 to 123393171 2060 - unclassified gene predicted gene, 37066
D1Mit341 1 123423772 to 123423985 213 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 341
D1Mit311 1 123423774 to 123423922 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 311
Gm37781 1 123457234 to 123460451 3217 - unclassified gene predicted gene, 37781
Gm37396 1 123468450 to 123469944 1494 - unclassified gene predicted gene, 37396
Tssr13302 1 123470651 to 123470655 4 - TSS region transcription start site region 13302
Gm38263 1 123559383 to 123562441 3058 - unclassified gene predicted gene, 38263
Tssr13303 1 123623761 to 123623769 8 - TSS region transcription start site region 13303
Hfnq1 1 123709030 to 93382588 -30326442 QTL hair follicle number QTL 1
Tssr13304 1 123718587 to 123718589 2 - TSS region transcription start site region 13304
Gm28929 1 123756558 to 123757750 1192 + pseudogene predicted gene 28929
Gm18875 1 123804543 to 123805421 878 - pseudogene predicted gene, 18875
Gm37551 1 123827299 to 123830159 2860 - unclassified gene predicted gene, 37551
Tssr13305 1 123853954 to 123853957 3 - TSS region transcription start site region 13305
Tssr13306 1 123887334 to 123887357 23 - TSS region transcription start site region 13306
D1Mit442 1 123985068 to 123985217 149 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 442
D1Mit519 1 124005979 to 124006116 137 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-519
D1Mit392 1 124022719 to 124022840 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 392
Tssr13307 1 124025444 to 124025488 44 - TSS region transcription start site region 13307
Tssr13308 1 124025539 to 124025570 31 - TSS region transcription start site region 13308
D1Mit239 1 124026710 to 124026899 189 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 239
Cpgi683 1 124045000 to 124046318 1318 CpG island CpG island 683
Tssr13309 1 124045211 to 124045235 24 - TSS region transcription start site region 13309
Tssr13310 1 124045247 to 124045267 20 - TSS region transcription start site region 13310
Tssr13311 1 124045283 to 124045294 11 - TSS region transcription start site region 13311
Tssr13312 1 124045487 to 124045522 35 - TSS region transcription start site region 13312
Tssr13313 1 124045523 to 124045571 48 - TSS region transcription start site region 13313
Tssr13314 1 124045977 to 124045989 12 - TSS region transcription start site region 13314
Tssr13315 1 124046003 to 124046085 82 - TSS region transcription start site region 13315
Tssr13316 1 124060567 to 124060571 4 - TSS region transcription start site region 13316