Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:120299707-121587659

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ecgnq1 1 103350337 to 120607496 17257159 QTL eccrine gland number QTL 1
Cpgi668 1 120340159 to 120342790 2631 CpG island CpG island 668
Tssr8402 1 120340569 to 120340580 11 + TSS region transcription start site region 8402
C1ql2 1 120340582 to 120343174 2592 + protein coding gene complement component 1, q subcomponent-like 2
Tssr8403 1 120340605 to 120340645 40 + TSS region transcription start site region 8403
Tssr8404 1 120340655 to 120340664 9 + TSS region transcription start site region 8404
Tssr8405 1 120340760 to 120340769 9 + TSS region transcription start site region 8405
Gm46154 1 120427074 to 120435740 8666 - lncRNA gene predicted gene, 46154
Tssr13251 1 120435722 to 120435727 5 - TSS region transcription start site region 13251
Tssr13252 1 120435739 to 120435750 11 - TSS region transcription start site region 13252
1700012E03Rik 1 120435805 to 120438455 2650 + lincRNA gene RIKEN cDNA 1700012E03 gene
Tssr13253 1 120447477 to 120447482 5 - TSS region transcription start site region 13253
Tssr13254 1 120449674 to 120449678 4 - TSS region transcription start site region 13254
Cpgi669 1 120469096 to 120469257 161 CpG island CpG island 669
Marco 1 120474538 to 120505024 30486 - protein coding gene macrophage receptor with collagenous structure
Tssr13255 1 120476667 to 120476688 21 - TSS region transcription start site region 13255
Tssr13256 1 120476721 to 120476734 13 - TSS region transcription start site region 13256
Tssr13257 1 120477285 to 120477287 2 - TSS region transcription start site region 13257
Tssr13258 1 120477389 to 120477437 48 - TSS region transcription start site region 13258
Tssr13259 1 120479033 to 120479049 16 - TSS region transcription start site region 13259
Tssr8406 1 120479336 to 120479368 32 + TSS region transcription start site region 8406
Tssr13260 1 120483187 to 120483212 25 - TSS region transcription start site region 13260
Tssr8407 1 120484615 to 120484651 36 + TSS region transcription start site region 8407
Tssr13261 1 120484804 to 120484818 14 - TSS region transcription start site region 13261
Tssr13262 1 120484831 to 120484863 32 - TSS region transcription start site region 13262
Tssr8408 1 120485842 to 120485855 13 + TSS region transcription start site region 8408
Tssr13263 1 120485878 to 120485923 45 - TSS region transcription start site region 13263
Tssr8409 1 120485884 to 120485909 25 + TSS region transcription start site region 8409
Tssr13264 1 120488183 to 120488195 12 - TSS region transcription start site region 13264
Tssr8410 1 120488190 to 120488226 36 + TSS region transcription start site region 8410
Tssr13265 1 120488561 to 120488582 21 - TSS region transcription start site region 13265
Tssr13266 1 120490082 to 120490100 18 - TSS region transcription start site region 13266
Tssr8411 1 120490905 to 120490930 25 + TSS region transcription start site region 8411
Tssr8412 1 120492033 to 120492067 34 + TSS region transcription start site region 8412
Tssr13267 1 120494122 to 120494140 18 - TSS region transcription start site region 13267
D1Mit391 1 120494511 to 120494612 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 391
Tssr13268 1 120494807 to 120494818 11 - TSS region transcription start site region 13268
Tssr8413 1 120495462 to 120495468 6 + TSS region transcription start site region 8413
Tssr13269 1 120496022 to 120496046 24 - TSS region transcription start site region 13269
Tssr13270 1 120504749 to 120504768 19 - TSS region transcription start site region 13270
Tssr13271 1 120504820 to 120504833 13 - TSS region transcription start site region 13271
Tssr13272 1 120504873 to 120504878 5 - TSS region transcription start site region 13272
Tssr13273 1 120504940 to 120504952 12 - TSS region transcription start site region 13273
Tssr13274 1 120517618 to 120517626 8 - TSS region transcription start site region 13274
Tssr13275 1 120517661 to 120517669 8 - TSS region transcription start site region 13275
Tssr13276 1 120531839 to 120531863 24 - TSS region transcription start site region 13276
D1Mit226 1 120542724 to 120542859 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 226
D1Mit28 1 120562271 to 120562392 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 28
Gm41939 1 120569428 to 120572277 2849 - lncRNA gene predicted gene, 41939
Cpgi670 1 120595933 to 120597001 1068 CpG island CpG island 670
Cpgi671 1 120599802 to 120600225 423 CpG island CpG island 671
D1Mit217 1 120601778 to 120601949 171 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 217
Abbp1 1 120601949 to 62907596 -57694353 QTL A/J and C57BL/6 blood pressure 1
Tir6 1 120601949 to 93609133 -26992816 QTL trypanosome infection response 6
Cpgi672 1 120602107 to 120604090 1983 CpG island CpG island 672
Tssr8414 1 120602378 to 120602391 13 + TSS region transcription start site region 8414
Tssr8415 1 120602405 to 120602414 9 + TSS region transcription start site region 8415
Tssr8416 1 120602428 to 120602437 9 + TSS region transcription start site region 8416
En1 1 120602487 to 120607991 5504 + protein coding gene engrailed 1
Tssr8417 1 120602511 to 120602522 11 + TSS region transcription start site region 8417
Cpgi673 1 120604740 to 120605252 512 CpG island CpG island 673
Cpgi674 1 120606649 to 120607419 770 CpG island CpG island 674
Gm34352 1 120608411 to 120616762 8351 - lncRNA gene predicted gene, 34352
Cpgi675 1 120613606 to 120613848 242 CpG island CpG island 675
Cpgi676 1 120614304 to 120614629 325 CpG island CpG island 676
Tssr8418 1 120621604 to 120621634 30 + TSS region transcription start site region 8418
Tssr8419 1 120621715 to 120621745 30 + TSS region transcription start site region 8419
2610027F03Rik 1 120621740 to 120690403 68663 + lincRNA gene RIKEN cDNA 2610027F03 gene
Tssr8420 1 120644681 to 120644690 9 + TSS region transcription start site region 8420
D1Mit419 1 120678643 to 120678790 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 419
Gm29346 1 120758443 to 120763565 5122 + lincRNA gene predicted gene 29346
D1Mit420 1 120776803 to 120776898 95 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 420
Gm29345 1 120816500 to 120836997 20497 + lincRNA gene predicted gene 29345
Gm29344 1 120825247 to 120825456 209 - pseudogene predicted gene 29344
Gm29348 1 120847989 to 120857486 9497 - lincRNA gene predicted gene 29348
Gm29347 1 120856674 to 120858010 1336 + lincRNA gene predicted gene 29347
Gm34584 1 120857644 to 120874294 16650 + lncRNA gene predicted gene, 34584
Gm37043 1 120868996 to 120872100 3104 + unclassified gene predicted gene, 37043
D1Mit470 1 120876202 to 120876343 141 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-470
Gm34641 1 120929707 to 120957659 27952 - lncRNA gene predicted gene, 34641
Gm34698 1 120969985 to 120993672 23687 - lncRNA gene predicted gene, 34698
Tssr184 1 120982999 to 120983001 2 + TSS region transcription start site region 184
Tssr13277 1 120993654 to 120993685 31 - TSS region transcription start site region 13277
Tssr8421 1 121035277 to 121035286 9 + TSS region transcription start site region 8421
Tssr8422 1 121049829 to 121049836 7 + TSS region transcription start site region 8422
Tssr8423 1 121087383 to 121087424 41 + TSS region transcription start site region 8423
Celrr 1 121087405 to 121120975 33570 + lincRNA gene cerebellum expressed regulatory RNA
Gm46155 1 121116976 to 121148039 31063 - lncRNA gene predicted gene, 46155
D1Mit390 1 121171745 to 121171867 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 390
Cpgi677 1 121177880 to 121178288 408 CpG island CpG island 677
Gm41940 1 121221797 to 121244519 22722 - lncRNA gene predicted gene, 41940
Gm29359 1 121224276 to 121227526 3250 + lincRNA gene predicted gene 29359
Gm38283 1 121300137 to 121300831 694 - unclassified gene predicted gene, 38283
Insig2 1 121304353 to 121332589 28236 - protein coding gene insulin induced gene 2
Tssr185 1 121307363 to 121307364 1 + TSS region transcription start site region 185
Tssr13278 1 121307947 to 121307973 26 - TSS region transcription start site region 13278
Cpgi678 1 121327383 to 121328243 860 CpG island CpG island 678
Tssr13279 1 121327651 to 121327657 6 - TSS region transcription start site region 13279
Tssr13280 1 121327672 to 121327690 18 - TSS region transcription start site region 13280
Tssr13281 1 121327734 to 121327768 34 - TSS region transcription start site region 13281
Tssr13282 1 121327776 to 121327803 27 - TSS region transcription start site region 13282
Tssr13283 1 121328027 to 121328044 17 - TSS region transcription start site region 13283
Gm37174 1 121328092 to 121331149 3057 + unclassified gene predicted gene, 37174
Tssr13284 1 121332515 to 121332538 23 - TSS region transcription start site region 13284
Tssr13285 1 121332545 to 121332568 23 - TSS region transcription start site region 13285
Tssr13286 1 121332571 to 121332587 16 - TSS region transcription start site region 13286
Tssr13287 1 121332662 to 121332671 9 - TSS region transcription start site region 13287
Tssr13288 1 121346170 to 121346181 11 - TSS region transcription start site region 13288
Tssr13289 1 121346193 to 121346215 22 - TSS region transcription start site region 13289
Tssr13290 1 121346222 to 121346227 5 - TSS region transcription start site region 13290
D1Ertd576e 1 121351117 to 121351336 219 DNA segment DNA segment, Chr 1, ERATO Doi 576, expressed
Gm46080 1 121358758 to 121359182 424 - protein coding gene predicted gene, 46080
2210011K15Rik 1 121359531 to 121360220 689 - lincRNA gene RIKEN cDNA 2210011K15 gene
Tssr13291 1 121359863 to 121359876 13 - TSS region transcription start site region 13291
Gm35243 1 121427608 to 121431010 3402 - lncRNA gene predicted gene, 35243
Tssr13292 1 121430690 to 121430700 10 - TSS region transcription start site region 13292
Cpgi679 1 121430929 to 121431836 907 CpG island CpG island 679
Tssr13293 1 121430966 to 121430984 18 - TSS region transcription start site region 13293
Tssr13294 1 121430989 to 121431012 23 - TSS region transcription start site region 13294
Tssr13295 1 121431016 to 121431027 11 - TSS region transcription start site region 13295
Tssr8424 1 121431051 to 121431124 73 + TSS region transcription start site region 8424
Ccdc93 1 121431067 to 121506460 75393 + protein coding gene coiled-coil domain containing 93
Tssr8425 1 121431128 to 121431152 24 + TSS region transcription start site region 8425
Tssr8426 1 121462234 to 121462247 13 + TSS region transcription start site region 8426
Tssr8427 1 121486943 to 121486948 5 + TSS region transcription start site region 8427
Tssr8428 1 121486949 to 121486961 12 + TSS region transcription start site region 8428
Tssr8429 1 121486970 to 121486980 10 + TSS region transcription start site region 8429
Gm15392 1 121489296 to 121493203 3907 - antisense lncRNA gene predicted gene 15392
Tssr8430 1 121495409 to 121495420 11 + TSS region transcription start site region 8430
Tssr8431 1 121495865 to 121495895 30 + TSS region transcription start site region 8431
Gm15393 1 121507585 to 121507803 218 - pseudogene predicted gene 15393
Htr5b 1 121509842 to 121528465 18623 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 5B
Gm8217 1 121520583 to 121521047 464 + pseudogene predicted gene 8217
Cpgi680 1 121527250 to 121528656 1406 CpG island CpG island 680
Ddx18 1 121553835 to 121567980 14145 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
Cpgi681 1 121567542 to 121568280 738 CpG island CpG island 681
Tssr13296 1 121567635 to 121567656 21 - TSS region transcription start site region 13296
Tssr13297 1 121567657 to 121567726 69 - TSS region transcription start site region 13297
Tssr13298 1 121567895 to 121567905 10 - TSS region transcription start site region 13298
Tssr13299 1 121567906 to 121567952 46 - TSS region transcription start site region 13299