Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:119644336-121314368

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ecgnq1 1 103350337 to 120607496 17257159 QTL eccrine gland number QTL 1
Epb41l5 1 119545037 to 119649000 103963 - protein coding gene erythrocyte membrane protein band 4.1 like 5
D1Mit366 1 119645481 to 119645630 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 366
Cpgi659 1 119648238 to 119649229 991 CpG island CpG island 659
Tssr8391 1 119648380 to 119648389 9 + TSS region transcription start site region 8391
Tssr13216 1 119648622 to 119648653 31 - TSS region transcription start site region 13216
Tssr13217 1 119648903 to 119648981 78 - TSS region transcription start site region 13217
Ptpn4 1 119652467 to 119837542 185075 - protein coding gene protein tyrosine phosphatase, non-receptor type 4
B230337E12Rik 1 119652468 to 119654875 2407 unclassified gene RIKEN cDNA B230337E12 gene
Gm3851 1 119787769 to 119788086 317 + pseudogene predicted gene 3851
Gm37745 1 119790763 to 119798925 8162 - unclassified gene predicted gene, 37745
Gm29657 1 119793520 to 119794229 709 + pseudogene predicted gene 29657
Gm8338 1 119817763 to 119818125 362 + pseudogene predicted gene 8338
Tssr13218 1 119821312 to 119821316 4 - TSS region transcription start site region 13218
Tssr13219 1 119828087 to 119828092 5 - TSS region transcription start site region 13219
Cpgi660 1 119836769 to 119837897 1128 CpG island CpG island 660
Tssr13220 1 119837088 to 119837139 51 - TSS region transcription start site region 13220
Tssr8392 1 119837170 to 119837177 7 + TSS region transcription start site region 8392
Tssr13221 1 119837288 to 119837299 11 - TSS region transcription start site region 13221
Tssr13222 1 119837319 to 119837328 9 - TSS region transcription start site region 13222
Tssr13223 1 119837338 to 119837386 48 - TSS region transcription start site region 13223
Tssr13224 1 119837466 to 119837555 89 - TSS region transcription start site region 13224
Tssr13225 1 119837667 to 119837673 6 - TSS region transcription start site region 13225
Gm29658 1 119874781 to 119875010 229 + pseudogene predicted gene 29658
Gm3551 1 119897461 to 119898124 663 + pseudogene predicted gene 3551
Tssr13226 1 119899853 to 119899870 17 - TSS region transcription start site region 13226
Gm28209 1 119903130 to 119906897 3767 + lincRNA gene predicted gene 28209
Tssr183 1 119906837 to 119906842 5 + TSS region transcription start site region 183
Tmem177 1 119907890 to 119913168 5278 - protein coding gene transmembrane protein 177
Cpgi661 1 119913070 to 119913436 366 CpG island CpG island 661
Tssr13227 1 119913077 to 119913086 9 - TSS region transcription start site region 13227
Tssr13228 1 119913162 to 119913202 40 - TSS region transcription start site region 13228
D1Mit260 1 119919798 to 119919934 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 260
Cfap221 1 119923341 to 119997234 73893 - protein coding gene cilia and flagella associated protein 221
Tssr13229 1 119936300 to 119936338 38 - TSS region transcription start site region 13229
Gm17973 1 119986797 to 119987314 517 + pseudogene predicted gene, 17973
Cpgi662 1 119997076 to 119997326 250 CpG island CpG island 662
Tssr13230 1 119997161 to 119997170 9 - TSS region transcription start site region 13230
Tssr13231 1 119997211 to 119997249 38 - TSS region transcription start site region 13231
Gm33817 1 119997707 to 119999485 1778 + lncRNA gene predicted gene, 33817
Sctr 1 120006899 to 120063539 56640 + protein coding gene secretin receptor
Tssr8393 1 120007013 to 120007028 15 + TSS region transcription start site region 8393
Tssr8394 1 120007045 to 120007059 14 + TSS region transcription start site region 8394
Tssr8395 1 120007072 to 120007083 11 + TSS region transcription start site region 8395
Cpgi663 1 120007156 to 120007667 511 CpG island CpG island 663
Cpgi664 1 120022119 to 120022274 155 CpG island CpG island 664
Gm33764 1 120026288 to 120031130 4842 - lncRNA gene predicted gene, 33764
D1Mit54 1 120040804 to 120040937 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 54
Lxw3 1 120040804 to 120040937 133 QTL lupus BXSB x NZW 3
Gm41936 1 120046759 to 120052737 5978 - lncRNA gene predicted gene, 41936
Tssr8396 1 120055233 to 120055236 3 + TSS region transcription start site region 8396
Tssr8397 1 120055249 to 120055259 10 + TSS region transcription start site region 8397
Tmem37 1 120067377 to 120074069 6692 - protein coding gene transmembrane protein 37
Tssr13232 1 120067952 to 120067966 14 - TSS region transcription start site region 13232
Cpgi665 1 120073079 to 120074255 1176 CpG island CpG island 665
Tssr13233 1 120073736 to 120073803 67 - TSS region transcription start site region 13233
Tssr13234 1 120074023 to 120074034 11 - TSS region transcription start site region 13234
Gm41937 1 120076237 to 120090089 13852 - lncRNA gene predicted gene, 41937
Tssr13235 1 120086787 to 120086809 22 - TSS region transcription start site region 13235
Gm41938 1 120090182 to 120105741 15559 + lncRNA gene predicted gene, 41938
Dbi 1 120113280 to 120121078 7798 - protein coding gene diazepam binding inhibitor
Tssr13236 1 120116418 to 120116445 27 - TSS region transcription start site region 13236
Tssr13237 1 120120053 to 120120085 32 - TSS region transcription start site region 13237
Tssr13238 1 120120140 to 120120194 54 - TSS region transcription start site region 13238
Cpgi666 1 120120737 to 120121609 872 CpG island CpG island 666
Tssr8398 1 120120825 to 120120869 44 + TSS region transcription start site region 8398
Tssr13239 1 120121006 to 120121023 17 - TSS region transcription start site region 13239
Tssr13240 1 120121030 to 120121041 11 - TSS region transcription start site region 13240
Tssr13241 1 120121058 to 120121073 15 - TSS region transcription start site region 13241
Tssr8399 1 120121161 to 120121183 22 + TSS region transcription start site region 8399
3110009E18Rik 1 120121187 to 120188189 67002 + protein coding gene RIKEN cDNA 3110009E18 gene
Tssr8400 1 120121280 to 120121297 17 + TSS region transcription start site region 8400
D1Mit191 1 120132775 to 120132974 199 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 191
Steap3 1 120226414 to 120271082 44668 - protein coding gene STEAP family member 3
Tssr13242 1 120258845 to 120258866 21 - TSS region transcription start site region 13242
Tssr13243 1 120258868 to 120258885 17 - TSS region transcription start site region 13243
Tssr13244 1 120258889 to 120258898 9 - TSS region transcription start site region 13244
Tssr8401 1 120261402 to 120261438 36 + TSS region transcription start site region 8401
Cpgi667 1 120264928 to 120265578 650 CpG island CpG island 667
Tssr13245 1 120265247 to 120265304 57 - TSS region transcription start site region 13245
Tssr13246 1 120265312 to 120265321 9 - TSS region transcription start site region 13246
Tssr13247 1 120265372 to 120265377 5 - TSS region transcription start site region 13247
Tssr13248 1 120270253 to 120270293 40 - TSS region transcription start site region 13248
Tssr13249 1 120271024 to 120271033 9 - TSS region transcription start site region 13249
Tssr13250 1 120271074 to 120271085 11 - TSS region transcription start site region 13250
D1Mit389 1 120284201 to 120284349 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 389
Cpgi668 1 120340159 to 120342790 2631 CpG island CpG island 668
Tssr8402 1 120340569 to 120340580 11 + TSS region transcription start site region 8402
C1ql2 1 120340582 to 120343174 2592 + protein coding gene complement component 1, q subcomponent-like 2
Tssr8403 1 120340605 to 120340645 40 + TSS region transcription start site region 8403
Tssr8404 1 120340655 to 120340664 9 + TSS region transcription start site region 8404
Tssr8405 1 120340760 to 120340769 9 + TSS region transcription start site region 8405
Gm46154 1 120427074 to 120435740 8666 - lncRNA gene predicted gene, 46154
Tssr13251 1 120435722 to 120435727 5 - TSS region transcription start site region 13251
Tssr13252 1 120435739 to 120435750 11 - TSS region transcription start site region 13252
1700012E03Rik 1 120435805 to 120438455 2650 + lincRNA gene RIKEN cDNA 1700012E03 gene
Tssr13253 1 120447477 to 120447482 5 - TSS region transcription start site region 13253
Tssr13254 1 120449674 to 120449678 4 - TSS region transcription start site region 13254
Cpgi669 1 120469096 to 120469257 161 CpG island CpG island 669
Marco 1 120474538 to 120505024 30486 - protein coding gene macrophage receptor with collagenous structure
Tssr13255 1 120476667 to 120476688 21 - TSS region transcription start site region 13255
Tssr13256 1 120476721 to 120476734 13 - TSS region transcription start site region 13256
Tssr13257 1 120477285 to 120477287 2 - TSS region transcription start site region 13257
Tssr13258 1 120477389 to 120477437 48 - TSS region transcription start site region 13258
Tssr13259 1 120479033 to 120479049 16 - TSS region transcription start site region 13259
Tssr8406 1 120479336 to 120479368 32 + TSS region transcription start site region 8406
Tssr13260 1 120483187 to 120483212 25 - TSS region transcription start site region 13260
Tssr8407 1 120484615 to 120484651 36 + TSS region transcription start site region 8407
Tssr13261 1 120484804 to 120484818 14 - TSS region transcription start site region 13261
Tssr13262 1 120484831 to 120484863 32 - TSS region transcription start site region 13262
Tssr8408 1 120485842 to 120485855 13 + TSS region transcription start site region 8408
Tssr13263 1 120485878 to 120485923 45 - TSS region transcription start site region 13263
Tssr8409 1 120485884 to 120485909 25 + TSS region transcription start site region 8409
Tssr13264 1 120488183 to 120488195 12 - TSS region transcription start site region 13264
Tssr8410 1 120488190 to 120488226 36 + TSS region transcription start site region 8410
Tssr13265 1 120488561 to 120488582 21 - TSS region transcription start site region 13265
Tssr13266 1 120490082 to 120490100 18 - TSS region transcription start site region 13266
Tssr8411 1 120490905 to 120490930 25 + TSS region transcription start site region 8411
Tssr8412 1 120492033 to 120492067 34 + TSS region transcription start site region 8412
Tssr13267 1 120494122 to 120494140 18 - TSS region transcription start site region 13267
D1Mit391 1 120494511 to 120494612 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 391
Tssr13268 1 120494807 to 120494818 11 - TSS region transcription start site region 13268
Tssr8413 1 120495462 to 120495468 6 + TSS region transcription start site region 8413
Tssr13269 1 120496022 to 120496046 24 - TSS region transcription start site region 13269
Tssr13270 1 120504749 to 120504768 19 - TSS region transcription start site region 13270
Tssr13271 1 120504820 to 120504833 13 - TSS region transcription start site region 13271
Tssr13272 1 120504873 to 120504878 5 - TSS region transcription start site region 13272
Tssr13273 1 120504940 to 120504952 12 - TSS region transcription start site region 13273
Tssr13274 1 120517618 to 120517626 8 - TSS region transcription start site region 13274
Tssr13275 1 120517661 to 120517669 8 - TSS region transcription start site region 13275
Tssr13276 1 120531839 to 120531863 24 - TSS region transcription start site region 13276
D1Mit226 1 120542724 to 120542859 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 226
D1Mit28 1 120562271 to 120562392 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 28
Gm41939 1 120569428 to 120572277 2849 - lncRNA gene predicted gene, 41939
Cpgi670 1 120595933 to 120597001 1068 CpG island CpG island 670
Cpgi671 1 120599802 to 120600225 423 CpG island CpG island 671
D1Mit217 1 120601778 to 120601949 171 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 217
Abbp1 1 120601949 to 62907596 -57694353 QTL A/J and C57BL/6 blood pressure 1
Tir6 1 120601949 to 93609133 -26992816 QTL trypanosome infection response 6
Cpgi672 1 120602107 to 120604090 1983 CpG island CpG island 672
Tssr8414 1 120602378 to 120602391 13 + TSS region transcription start site region 8414
Tssr8415 1 120602405 to 120602414 9 + TSS region transcription start site region 8415
Tssr8416 1 120602428 to 120602437 9 + TSS region transcription start site region 8416
En1 1 120602487 to 120607991 5504 + protein coding gene engrailed 1
Tssr8417 1 120602511 to 120602522 11 + TSS region transcription start site region 8417
Cpgi673 1 120604740 to 120605252 512 CpG island CpG island 673
Cpgi674 1 120606649 to 120607419 770 CpG island CpG island 674
Gm34352 1 120608411 to 120616762 8351 - lncRNA gene predicted gene, 34352
Cpgi675 1 120613606 to 120613848 242 CpG island CpG island 675
Cpgi676 1 120614304 to 120614629 325 CpG island CpG island 676
Tssr8418 1 120621604 to 120621634 30 + TSS region transcription start site region 8418
Tssr8419 1 120621715 to 120621745 30 + TSS region transcription start site region 8419
2610027F03Rik 1 120621740 to 120690403 68663 + lincRNA gene RIKEN cDNA 2610027F03 gene
Tssr8420 1 120644681 to 120644690 9 + TSS region transcription start site region 8420
D1Mit419 1 120678643 to 120678790 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 419
Gm29346 1 120758443 to 120763565 5122 + lincRNA gene predicted gene 29346
D1Mit420 1 120776803 to 120776898 95 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 420
Gm29345 1 120816500 to 120836997 20497 + lincRNA gene predicted gene 29345
Gm29344 1 120825247 to 120825456 209 - pseudogene predicted gene 29344
Gm29348 1 120847989 to 120857486 9497 - lincRNA gene predicted gene 29348
Gm29347 1 120856674 to 120858010 1336 + lincRNA gene predicted gene 29347
Gm34584 1 120857644 to 120874294 16650 + lncRNA gene predicted gene, 34584
Gm37043 1 120868996 to 120872100 3104 + unclassified gene predicted gene, 37043
D1Mit470 1 120876202 to 120876343 141 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-470
Gm34641 1 120929707 to 120957659 27952 - lncRNA gene predicted gene, 34641
Gm34698 1 120969985 to 120993672 23687 - lncRNA gene predicted gene, 34698
Tssr184 1 120982999 to 120983001 2 + TSS region transcription start site region 184
Tssr13277 1 120993654 to 120993685 31 - TSS region transcription start site region 13277
Tssr8421 1 121035277 to 121035286 9 + TSS region transcription start site region 8421
Tssr8422 1 121049829 to 121049836 7 + TSS region transcription start site region 8422
Tssr8423 1 121087383 to 121087424 41 + TSS region transcription start site region 8423
Celrr 1 121087405 to 121120975 33570 + lincRNA gene cerebellum expressed regulatory RNA
Gm46155 1 121116976 to 121148039 31063 - lncRNA gene predicted gene, 46155
D1Mit390 1 121171745 to 121171867 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 390
Cpgi677 1 121177880 to 121178288 408 CpG island CpG island 677
Gm41940 1 121221797 to 121244519 22722 - lncRNA gene predicted gene, 41940
Gm29359 1 121224276 to 121227526 3250 + lincRNA gene predicted gene 29359
Gm38283 1 121300137 to 121300831 694 - unclassified gene predicted gene, 38283
Insig2 1 121304353 to 121332589 28236 - protein coding gene insulin induced gene 2
Tssr185 1 121307363 to 121307364 1 + TSS region transcription start site region 185
Tssr13278 1 121307947 to 121307973 26 - TSS region transcription start site region 13278