Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:119588087-120068092

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Epb41l5 1 119545037 to 119649000 103963 - protein coding gene erythrocyte membrane protein band 4.1 like 5
Gm37219 1 119630744 to 119631669 925 - unclassified gene predicted gene, 37219
Tssr13214 1 119631667 to 119631668 1 - TSS region transcription start site region 13214
Tssr13215 1 119637442 to 119637446 4 - TSS region transcription start site region 13215
Cpgi658 1 119642496 to 119642682 186 CpG island CpG island 658
D1Mit366 1 119645481 to 119645630 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 366
Cpgi659 1 119648238 to 119649229 991 CpG island CpG island 659
Tssr8391 1 119648380 to 119648389 9 + TSS region transcription start site region 8391
Tssr13216 1 119648622 to 119648653 31 - TSS region transcription start site region 13216
Tssr13217 1 119648903 to 119648981 78 - TSS region transcription start site region 13217
Ptpn4 1 119652467 to 119837542 185075 - protein coding gene protein tyrosine phosphatase, non-receptor type 4
B230337E12Rik 1 119652468 to 119654875 2407 unclassified gene RIKEN cDNA B230337E12 gene
Gm3851 1 119787769 to 119788086 317 + pseudogene predicted gene 3851
Gm37745 1 119790763 to 119798925 8162 - unclassified gene predicted gene, 37745
Gm29657 1 119793520 to 119794229 709 + pseudogene predicted gene 29657
Gm8338 1 119817763 to 119818125 362 + pseudogene predicted gene 8338
Tssr13218 1 119821312 to 119821316 4 - TSS region transcription start site region 13218
Tssr13219 1 119828087 to 119828092 5 - TSS region transcription start site region 13219
Cpgi660 1 119836769 to 119837897 1128 CpG island CpG island 660
Tssr13220 1 119837088 to 119837139 51 - TSS region transcription start site region 13220
Tssr8392 1 119837170 to 119837177 7 + TSS region transcription start site region 8392
Tssr13221 1 119837288 to 119837299 11 - TSS region transcription start site region 13221
Tssr13222 1 119837319 to 119837328 9 - TSS region transcription start site region 13222
Tssr13223 1 119837338 to 119837386 48 - TSS region transcription start site region 13223
Tssr13224 1 119837466 to 119837555 89 - TSS region transcription start site region 13224
Tssr13225 1 119837667 to 119837673 6 - TSS region transcription start site region 13225
Gm29658 1 119874781 to 119875010 229 + pseudogene predicted gene 29658
Gm3551 1 119897461 to 119898124 663 + pseudogene predicted gene 3551
Tssr13226 1 119899853 to 119899870 17 - TSS region transcription start site region 13226
Gm28209 1 119903130 to 119906897 3767 + lincRNA gene predicted gene 28209
Tssr183 1 119906837 to 119906842 5 + TSS region transcription start site region 183
Tmem177 1 119907890 to 119913168 5278 - protein coding gene transmembrane protein 177
Cpgi661 1 119913070 to 119913436 366 CpG island CpG island 661
Tssr13227 1 119913077 to 119913086 9 - TSS region transcription start site region 13227
Tssr13228 1 119913162 to 119913202 40 - TSS region transcription start site region 13228
D1Mit260 1 119919798 to 119919934 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 260
Cfap221 1 119923341 to 119997234 73893 - protein coding gene cilia and flagella associated protein 221
Tssr13229 1 119936300 to 119936338 38 - TSS region transcription start site region 13229
Gm17973 1 119986797 to 119987314 517 + pseudogene predicted gene, 17973
Cpgi662 1 119997076 to 119997326 250 CpG island CpG island 662
Tssr13230 1 119997161 to 119997170 9 - TSS region transcription start site region 13230
Tssr13231 1 119997211 to 119997249 38 - TSS region transcription start site region 13231
Gm33817 1 119997707 to 119999485 1778 + lncRNA gene predicted gene, 33817
Sctr 1 120006899 to 120063539 56640 + protein coding gene secretin receptor
Tssr8393 1 120007013 to 120007028 15 + TSS region transcription start site region 8393
Tssr8394 1 120007045 to 120007059 14 + TSS region transcription start site region 8394
Tssr8395 1 120007072 to 120007083 11 + TSS region transcription start site region 8395
Cpgi663 1 120007156 to 120007667 511 CpG island CpG island 663
Cpgi664 1 120022119 to 120022274 155 CpG island CpG island 664
Gm33764 1 120026288 to 120031130 4842 - lncRNA gene predicted gene, 33764
D1Mit54 1 120040804 to 120040937 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 54
Lxw3 1 120040804 to 120040937 133 QTL lupus BXSB x NZW 3
Gm41936 1 120046759 to 120052737 5978 - lncRNA gene predicted gene, 41936
Tssr8396 1 120055233 to 120055236 3 + TSS region transcription start site region 8396
Tssr8397 1 120055249 to 120055259 10 + TSS region transcription start site region 8397
Tmem37 1 120067377 to 120074069 6692 - protein coding gene transmembrane protein 37
Tssr13232 1 120067952 to 120067966 14 - TSS region transcription start site region 13232