Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:119450481-119840630

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46145 1 119453884 to 119454517 633 + lncRNA gene predicted gene, 46145
Tssr8386 1 119453924 to 119453941 17 + TSS region transcription start site region 8386
Tssr8387 1 119453952 to 119453961 9 + TSS region transcription start site region 8387
Ralb 1 119470305 to 119504782 34477 - protein coding gene v-ral simian leukemia viral oncogene B
Tssr13208 1 119471049 to 119471053 4 - TSS region transcription start site region 13208
D1Mit27 1 119490439 to 119490692 253 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 27
Gm29454 1 119499477 to 119499869 392 + pseudogene predicted gene 29454
Tssr13209 1 119504232 to 119504265 33 - TSS region transcription start site region 13209
Cpgi656 1 119504319 to 119505123 804 CpG island CpG island 656
Tssr13210 1 119504597 to 119504652 55 - TSS region transcription start site region 13210
Tssr13211 1 119504684 to 119504724 40 - TSS region transcription start site region 13211
Tssr13212 1 119504736 to 119504795 59 - TSS region transcription start site region 13212
Gm27184 1 119520090 to 119526359 6269 - antisense lncRNA gene predicted gene 27184
Tssr8388 1 119523736 to 119523752 16 + TSS region transcription start site region 8388
Tssr182 1 119523763 to 119523776 13 + TSS region transcription start site region 182
Cpgi657 1 119525616 to 119527018 1402 CpG island CpG island 657
Tssr8389 1 119526125 to 119526180 55 + TSS region transcription start site region 8389
Tmem185b 1 119526160 to 119528983 2823 + protein coding gene transmembrane protein 185B
Tssr8390 1 119526181 to 119526197 16 + TSS region transcription start site region 8390
Tssr13213 1 119526378 to 119526406 28 - TSS region transcription start site region 13213
3830432H09Rik 1 119529480 to 119536165 6685 - lincRNA gene RIKEN cDNA 3830432H09 gene
Gm25322 1 119530211 to 119530314 103 + snRNA gene predicted gene, 25322
Epb41l5 1 119545037 to 119649000 103963 - protein coding gene erythrocyte membrane protein band 4.1 like 5
Gm37219 1 119630744 to 119631669 925 - unclassified gene predicted gene, 37219
Tssr13214 1 119631667 to 119631668 1 - TSS region transcription start site region 13214
Tssr13215 1 119637442 to 119637446 4 - TSS region transcription start site region 13215
Cpgi658 1 119642496 to 119642682 186 CpG island CpG island 658
D1Mit366 1 119645481 to 119645630 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 366
Cpgi659 1 119648238 to 119649229 991 CpG island CpG island 659
Tssr8391 1 119648380 to 119648389 9 + TSS region transcription start site region 8391
Tssr13216 1 119648622 to 119648653 31 - TSS region transcription start site region 13216
Tssr13217 1 119648903 to 119648981 78 - TSS region transcription start site region 13217
Ptpn4 1 119652467 to 119837542 185075 - protein coding gene protein tyrosine phosphatase, non-receptor type 4
B230337E12Rik 1 119652468 to 119654875 2407 unclassified gene RIKEN cDNA B230337E12 gene
Gm3851 1 119787769 to 119788086 317 + pseudogene predicted gene 3851
Gm37745 1 119790763 to 119798925 8162 - unclassified gene predicted gene, 37745
Gm29657 1 119793520 to 119794229 709 + pseudogene predicted gene 29657
Gm8338 1 119817763 to 119818125 362 + pseudogene predicted gene 8338
Tssr13218 1 119821312 to 119821316 4 - TSS region transcription start site region 13218
Tssr13219 1 119828087 to 119828092 5 - TSS region transcription start site region 13219
Cpgi660 1 119836769 to 119837897 1128 CpG island CpG island 660
Tssr13220 1 119837088 to 119837139 51 - TSS region transcription start site region 13220
Tssr8392 1 119837170 to 119837177 7 + TSS region transcription start site region 8392
Tssr13221 1 119837288 to 119837299 11 - TSS region transcription start site region 13221
Tssr13222 1 119837319 to 119837328 9 - TSS region transcription start site region 13222
Tssr13223 1 119837338 to 119837386 48 - TSS region transcription start site region 13223
Tssr13224 1 119837466 to 119837555 89 - TSS region transcription start site region 13224
Tssr13225 1 119837667 to 119837673 6 - TSS region transcription start site region 13225