Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:118905465-119932248

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gli2 1 118834132 to 119053619 219487 - protein coding gene GLI-Kruppel family member GLI2
D1Mit368 1 118911488 to 118911605 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 368
D1Mit367 1 118911488 to 118911613 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 367
Mir6346 1 118954220 to 118954300 80 + miRNA gene microRNA 6346
D1Mit189 1 118982324 to 118982471 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 189
Tssr13194 1 118982551 to 118982606 55 - TSS region transcription start site region 13194
Cpgi652 1 119047604 to 119048278 674 CpG island CpG island 652
Cpgi653 1 119051965 to 119054442 2477 CpG island CpG island 653
5730512F23Rik 1 119052492 to 119053233 741 unclassified gene RIKEN cDNA 5730512F23 gene
Tssr13195 1 119053348 to 119053370 22 - TSS region transcription start site region 13195
Tssr13196 1 119053372 to 119053423 51 - TSS region transcription start site region 13196
Tssr13197 1 119053521 to 119053555 34 - TSS region transcription start site region 13197
Tssr13198 1 119053572 to 119053583 11 - TSS region transcription start site region 13198
Tssr13199 1 119053620 to 119053638 18 - TSS region transcription start site region 13199
Tssr13200 1 119053692 to 119053710 18 - TSS region transcription start site region 13200
Gm26831 1 119058469 to 119059848 1379 + lincRNA gene predicted gene, 26831
Gm41934 1 119119086 to 119126904 7818 - lncRNA gene predicted gene, 41934
Gm8321 1 119157586 to 119158565 979 + pseudogene predicted gene 8321
Cpgi654 1 119189419 to 119189906 487 CpG island CpG island 654
D1Mit240 1 119191581 to 119191725 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 240
Gm46144 1 119200992 to 119210200 9208 + lncRNA gene predicted gene, 46144
Tssr181 1 119211127 to 119211130 3 + TSS region transcription start site region 181
Gm3508 1 119241962 to 119242753 791 - pseudogene predicted gene 3508
D1Mit443 1 119245817 to 119245917 100 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 443
Tssr8384 1 119290102 to 119290110 8 + TSS region transcription start site region 8384
Gm33388 1 119305331 to 119320644 15313 + lncRNA gene predicted gene, 33388
Gm29456 1 119305346 to 119326833 21487 - lincRNA gene predicted gene 29456
Tssr8385 1 119305586 to 119305632 46 + TSS region transcription start site region 8385
Gm29455 1 119329200 to 119385581 56381 + lincRNA gene predicted gene 29455
D1Mit535 1 119385372 to 119385496 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 535
Inhbb 1 119415465 to 119422248 6783 - protein coding gene inhibin beta-B
Cpgi655 1 119419847 to 119423111 3264 CpG island CpG island 655
Tssr13201 1 119421109 to 119421144 35 - TSS region transcription start site region 13201
Tssr13202 1 119421153 to 119421163 10 - TSS region transcription start site region 13202
Tssr13203 1 119422151 to 119422164 13 - TSS region transcription start site region 13203
Tssr13204 1 119422165 to 119422172 7 - TSS region transcription start site region 13204
Tssr13205 1 119422181 to 119422196 15 - TSS region transcription start site region 13205
Tssr13206 1 119422199 to 119422211 12 - TSS region transcription start site region 13206
Tssr13207 1 119422239 to 119422291 52 - TSS region transcription start site region 13207
Gm41935 1 119439055 to 119439648 593 + lncRNA gene predicted gene, 41935
Gm33490 1 119440139 to 119445495 5356 - lncRNA gene predicted gene, 33490
Gm33575 1 119444263 to 119445804 1541 + lncRNA gene predicted gene, 33575
Gm46145 1 119453884 to 119454517 633 + lncRNA gene predicted gene, 46145
Tssr8386 1 119453924 to 119453941 17 + TSS region transcription start site region 8386
Tssr8387 1 119453952 to 119453961 9 + TSS region transcription start site region 8387
Ralb 1 119470305 to 119504782 34477 - protein coding gene v-ral simian leukemia viral oncogene B
Tssr13208 1 119471049 to 119471053 4 - TSS region transcription start site region 13208
D1Mit27 1 119490439 to 119490692 253 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 27
Gm29454 1 119499477 to 119499869 392 + pseudogene predicted gene 29454
Tssr13209 1 119504232 to 119504265 33 - TSS region transcription start site region 13209
Cpgi656 1 119504319 to 119505123 804 CpG island CpG island 656
Tssr13210 1 119504597 to 119504652 55 - TSS region transcription start site region 13210
Tssr13211 1 119504684 to 119504724 40 - TSS region transcription start site region 13211
Tssr13212 1 119504736 to 119504795 59 - TSS region transcription start site region 13212
Gm27184 1 119520090 to 119526359 6269 - antisense lncRNA gene predicted gene 27184
Tssr8388 1 119523736 to 119523752 16 + TSS region transcription start site region 8388
Tssr182 1 119523763 to 119523776 13 + TSS region transcription start site region 182
Cpgi657 1 119525616 to 119527018 1402 CpG island CpG island 657
Tssr8389 1 119526125 to 119526180 55 + TSS region transcription start site region 8389
Tmem185b 1 119526160 to 119528983 2823 + protein coding gene transmembrane protein 185B
Tssr8390 1 119526181 to 119526197 16 + TSS region transcription start site region 8390
Tssr13213 1 119526378 to 119526406 28 - TSS region transcription start site region 13213
3830432H09Rik 1 119529480 to 119536165 6685 - lincRNA gene RIKEN cDNA 3830432H09 gene
Gm25322 1 119530211 to 119530314 103 + snRNA gene predicted gene, 25322
Epb41l5 1 119545037 to 119649000 103963 - protein coding gene erythrocyte membrane protein band 4.1 like 5
Gm37219 1 119630744 to 119631669 925 - unclassified gene predicted gene, 37219
Tssr13214 1 119631667 to 119631668 1 - TSS region transcription start site region 13214
Tssr13215 1 119637442 to 119637446 4 - TSS region transcription start site region 13215
Cpgi658 1 119642496 to 119642682 186 CpG island CpG island 658
D1Mit366 1 119645481 to 119645630 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 366
Cpgi659 1 119648238 to 119649229 991 CpG island CpG island 659
Tssr8391 1 119648380 to 119648389 9 + TSS region transcription start site region 8391
Tssr13216 1 119648622 to 119648653 31 - TSS region transcription start site region 13216
Tssr13217 1 119648903 to 119648981 78 - TSS region transcription start site region 13217
Ptpn4 1 119652467 to 119837542 185075 - protein coding gene protein tyrosine phosphatase, non-receptor type 4
B230337E12Rik 1 119652468 to 119654875 2407 unclassified gene RIKEN cDNA B230337E12 gene
Gm3851 1 119787769 to 119788086 317 + pseudogene predicted gene 3851
Gm37745 1 119790763 to 119798925 8162 - unclassified gene predicted gene, 37745
Gm29657 1 119793520 to 119794229 709 + pseudogene predicted gene 29657
Gm8338 1 119817763 to 119818125 362 + pseudogene predicted gene 8338
Tssr13218 1 119821312 to 119821316 4 - TSS region transcription start site region 13218
Tssr13219 1 119828087 to 119828092 5 - TSS region transcription start site region 13219
Cpgi660 1 119836769 to 119837897 1128 CpG island CpG island 660
Tssr13220 1 119837088 to 119837139 51 - TSS region transcription start site region 13220
Tssr8392 1 119837170 to 119837177 7 + TSS region transcription start site region 8392
Tssr13221 1 119837288 to 119837299 11 - TSS region transcription start site region 13221
Tssr13222 1 119837319 to 119837328 9 - TSS region transcription start site region 13222
Tssr13223 1 119837338 to 119837386 48 - TSS region transcription start site region 13223
Tssr13224 1 119837466 to 119837555 89 - TSS region transcription start site region 13224
Tssr13225 1 119837667 to 119837673 6 - TSS region transcription start site region 13225
Gm29658 1 119874781 to 119875010 229 + pseudogene predicted gene 29658
Gm3551 1 119897461 to 119898124 663 + pseudogene predicted gene 3551
Tssr13226 1 119899853 to 119899870 17 - TSS region transcription start site region 13226
Gm28209 1 119903130 to 119906897 3767 + lincRNA gene predicted gene 28209
Tssr183 1 119906837 to 119906842 5 + TSS region transcription start site region 183
Tmem177 1 119907890 to 119913168 5278 - protein coding gene transmembrane protein 177
Cpgi661 1 119913070 to 119913436 366 CpG island CpG island 661
Tssr13227 1 119913077 to 119913086 9 - TSS region transcription start site region 13227
Tssr13228 1 119913162 to 119913202 40 - TSS region transcription start site region 13228
D1Mit260 1 119919798 to 119919934 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 260
Cfap221 1 119923341 to 119997234 73893 - protein coding gene cilia and flagella associated protein 221