Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:118327004-118637024

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nifk 1 118321839 to 118333822 11983 + protein coding gene nucleolar protein interacting with the FHA domain of MKI67
D1Mit309 1 118342675 to 118342796 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 309
Gm28867 1 118359290 to 118362918 3628 + lincRNA gene predicted gene 28867
Cpgi647 1 118388667 to 118389779 1112 CpG island CpG island 647
Tssr13192 1 118388862 to 118388888 26 - TSS region transcription start site region 13192
Clasp1 1 118389058 to 118609462 220404 + protein coding gene CLIP associating protein 1
Tssr8360 1 118389423 to 118389465 42 + TSS region transcription start site region 8360
Tssr8361 1 118389468 to 118389481 13 + TSS region transcription start site region 8361
Cpgi648 1 118389958 to 118390255 297 CpG island CpG island 648
Tssr8362 1 118391224 to 118391230 6 + TSS region transcription start site region 8362
Tssr8363 1 118413841 to 118413845 4 + TSS region transcription start site region 8363
Gm26080 1 118453355 to 118453485 130 - snoRNA gene predicted gene, 26080
2900060B14Rik 1 118458669 to 118459265 596 - antisense lncRNA gene RIKEN cDNA 2900060B14 gene
Gm22710 1 118459141 to 118459265 124 - snRNA gene predicted gene, 22710
Cpgi649 1 118459177 to 118459998 821 CpG island CpG island 649
Tssr13193 1 118459263 to 118459267 4 - TSS region transcription start site region 13193
Tssr8364 1 118459587 to 118459621 34 + TSS region transcription start site region 8364
Tssr8365 1 118469809 to 118469820 11 + TSS region transcription start site region 8365
Gm28466 1 118478604 to 118479591 987 - pseudogene predicted gene 28466
Tssr8366 1 118481448 to 118481457 9 + TSS region transcription start site region 8366
Tssr8367 1 118481462 to 118481477 15 + TSS region transcription start site region 8367
Tssr8368 1 118481504 to 118481515 11 + TSS region transcription start site region 8368
Tssr8369 1 118481694 to 118481716 22 + TSS region transcription start site region 8369
Tssr8370 1 118481966 to 118481979 13 + TSS region transcription start site region 8370
Tssr8371 1 118482004 to 118482024 20 + TSS region transcription start site region 8371
Tssr8372 1 118482041 to 118482063 22 + TSS region transcription start site region 8372
Tssr8373 1 118482186 to 118482194 8 + TSS region transcription start site region 8373
Tssr8374 1 118569904 to 118569908 4 + TSS region transcription start site region 8374
Tssr180 1 118590967 to 118590968 1 - TSS region transcription start site region 180
Tssr8375 1 118597272 to 118597276 4 + TSS region transcription start site region 8375
Cpgi650 1 118627718 to 118628454 736 CpG island CpG island 650
Tssr8376 1 118627943 to 118627951 8 + TSS region transcription start site region 8376
Tfcp2l1 1 118627945 to 118685168 57223 + protein coding gene transcription factor CP2-like 1
Tssr8377 1 118627986 to 118628014 28 + TSS region transcription start site region 8377
Tssr8378 1 118628045 to 118628060 15 + TSS region transcription start site region 8378