Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:117987272-119207276

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28358 1 118008769 to 118030415 21646 + pseudogene predicted gene 28358
Gm29489 1 118030315 to 118046849 16534 + pseudogene predicted gene 29489
Gm29490 1 118040649 to 118040990 341 + pseudogene predicted gene 29490
Gm29104 1 118064118 to 118064959 841 + pseudogene predicted gene 29104
Gm46079 1 118144732 to 118148146 3414 - pseudogene predicted gene, 46079
Gm29106 1 118176542 to 118202307 25765 + protein coding gene predicted gene 29106
Gm7200 1 118249863 to 118251025 1162 + pseudogene predicted gene 7200
Tsn 1 118298517 to 118311132 12615 - protein coding gene translin
Tssr8357 1 118299316 to 118299328 12 + TSS region transcription start site region 8357
Tssr13190 1 118299591 to 118299592 1 - TSS region transcription start site region 13190
Cpgi645 1 118310771 to 118311576 805 CpG island CpG island 645
Tssr13191 1 118311163 to 118311221 58 - TSS region transcription start site region 13191
Cpgi646 1 118321686 to 118322306 620 CpG island CpG island 646
Tssr8358 1 118321834 to 118321882 48 + TSS region transcription start site region 8358
Nifk 1 118321839 to 118333822 11983 + protein coding gene nucleolar protein interacting with the FHA domain of MKI67
Tssr8359 1 118321888 to 118321894 6 + TSS region transcription start site region 8359
D1Mit309 1 118342675 to 118342796 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 309
Gm28867 1 118359290 to 118362918 3628 + lincRNA gene predicted gene 28867
Cpgi647 1 118388667 to 118389779 1112 CpG island CpG island 647
Tssr13192 1 118388862 to 118388888 26 - TSS region transcription start site region 13192
Clasp1 1 118389058 to 118609462 220404 + protein coding gene CLIP associating protein 1
Tssr8360 1 118389423 to 118389465 42 + TSS region transcription start site region 8360
Tssr8361 1 118389468 to 118389481 13 + TSS region transcription start site region 8361
Cpgi648 1 118389958 to 118390255 297 CpG island CpG island 648
Tssr8362 1 118391224 to 118391230 6 + TSS region transcription start site region 8362
Tssr8363 1 118413841 to 118413845 4 + TSS region transcription start site region 8363
Gm26080 1 118453355 to 118453485 130 - snoRNA gene predicted gene, 26080
2900060B14Rik 1 118458669 to 118459265 596 - antisense lncRNA gene RIKEN cDNA 2900060B14 gene
Gm22710 1 118459141 to 118459265 124 - snRNA gene predicted gene, 22710
Cpgi649 1 118459177 to 118459998 821 CpG island CpG island 649
Tssr13193 1 118459263 to 118459267 4 - TSS region transcription start site region 13193
Tssr8364 1 118459587 to 118459621 34 + TSS region transcription start site region 8364
Tssr8365 1 118469809 to 118469820 11 + TSS region transcription start site region 8365
Gm28466 1 118478604 to 118479591 987 - pseudogene predicted gene 28466
Tssr8366 1 118481448 to 118481457 9 + TSS region transcription start site region 8366
Tssr8367 1 118481462 to 118481477 15 + TSS region transcription start site region 8367
Tssr8368 1 118481504 to 118481515 11 + TSS region transcription start site region 8368
Tssr8369 1 118481694 to 118481716 22 + TSS region transcription start site region 8369
Tssr8370 1 118481966 to 118481979 13 + TSS region transcription start site region 8370
Tssr8371 1 118482004 to 118482024 20 + TSS region transcription start site region 8371
Tssr8372 1 118482041 to 118482063 22 + TSS region transcription start site region 8372
Tssr8373 1 118482186 to 118482194 8 + TSS region transcription start site region 8373
Tssr8374 1 118569904 to 118569908 4 + TSS region transcription start site region 8374
Tssr180 1 118590967 to 118590968 1 - TSS region transcription start site region 180
Tssr8375 1 118597272 to 118597276 4 + TSS region transcription start site region 8375
Cpgi650 1 118627718 to 118628454 736 CpG island CpG island 650
Tssr8376 1 118627943 to 118627951 8 + TSS region transcription start site region 8376
Tfcp2l1 1 118627945 to 118685168 57223 + protein coding gene transcription factor CP2-like 1
Tssr8377 1 118627986 to 118628014 28 + TSS region transcription start site region 8377
Tssr8378 1 118628045 to 118628060 15 + TSS region transcription start site region 8378
Gm22094 1 118638288 to 118638404 116 - rRNA gene predicted gene, 22094
Gm28882 1 118651482 to 118651795 313 - pseudogene predicted gene 28882
Tssr8379 1 118653751 to 118653755 4 + TSS region transcription start site region 8379
Tssr8380 1 118675572 to 118675596 24 + TSS region transcription start site region 8380
Tssr8381 1 118679424 to 118679436 12 + TSS region transcription start site region 8381
Gm23497 1 118681821 to 118681950 129 + snRNA gene predicted gene, 23497
Tssr8382 1 118683462 to 118683473 11 + TSS region transcription start site region 8382
Gm28467 1 118810136 to 118810453 317 + pseudogene predicted gene 28467
Gli2 1 118834132 to 119053619 219487 - protein coding gene GLI-Kruppel family member GLI2
Cpgi651 1 118837282 to 118838072 790 CpG island CpG island 651
Tssr8383 1 118852490 to 118852503 13 + TSS region transcription start site region 8383
D1Mit368 1 118911488 to 118911605 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 368
D1Mit367 1 118911488 to 118911613 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 367
Mir6346 1 118954220 to 118954300 80 + miRNA gene microRNA 6346
D1Mit189 1 118982324 to 118982471 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 189
Tssr13194 1 118982551 to 118982606 55 - TSS region transcription start site region 13194
Cpgi652 1 119047604 to 119048278 674 CpG island CpG island 652
Cpgi653 1 119051965 to 119054442 2477 CpG island CpG island 653
5730512F23Rik 1 119052492 to 119053233 741 unclassified gene RIKEN cDNA 5730512F23 gene
Tssr13195 1 119053348 to 119053370 22 - TSS region transcription start site region 13195
Tssr13196 1 119053372 to 119053423 51 - TSS region transcription start site region 13196
Tssr13197 1 119053521 to 119053555 34 - TSS region transcription start site region 13197
Tssr13198 1 119053572 to 119053583 11 - TSS region transcription start site region 13198
Tssr13199 1 119053620 to 119053638 18 - TSS region transcription start site region 13199
Tssr13200 1 119053692 to 119053710 18 - TSS region transcription start site region 13200
Gm26831 1 119058469 to 119059848 1379 + lincRNA gene predicted gene, 26831
Gm41934 1 119119086 to 119126904 7818 - lncRNA gene predicted gene, 41934
Gm8321 1 119157586 to 119158565 979 + pseudogene predicted gene 8321
Cpgi654 1 119189419 to 119189906 487 CpG island CpG island 654
D1Mit240 1 119191581 to 119191725 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 240
Gm46144 1 119200992 to 119210200 9208 + lncRNA gene predicted gene, 46144