Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:117649118-118479959

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28362 1 117662291 to 117678373 16082 + pseudogene predicted gene 28362
Gm28363 1 117726867 to 117727955 1088 + protein coding gene predicted gene 28363
Gm28359 1 117741367 to 117768622 27255 + pseudogene predicted gene 28359
Gm18182 1 117747031 to 117751372 4341 - pseudogene predicted gene, 18182
B020011L13Rik 1 117781135 to 117803359 22224 + protein coding gene RIKEN cDNA B020011L13 gene
Gm28360 1 117830081 to 117854496 24415 + protein coding gene predicted gene 28360
Gm28169 1 117842962 to 117843306 344 + pseudogene predicted gene 28169
Gm7195 1 117898101 to 117899701 1600 + pseudogene predicted gene 7195
Gm28168 1 117928015 to 117949988 21973 + protein coding gene predicted gene 28168
Gm7145 1 117965939 to 117986884 20945 + protein coding gene predicted gene 7145
Gm28358 1 118008769 to 118030415 21646 + pseudogene predicted gene 28358
Gm29489 1 118030315 to 118046849 16534 + pseudogene predicted gene 29489
Gm29490 1 118040649 to 118040990 341 + pseudogene predicted gene 29490
Gm29104 1 118064118 to 118064959 841 + pseudogene predicted gene 29104
Gm46079 1 118144732 to 118148146 3414 - pseudogene predicted gene, 46079
Gm29106 1 118176542 to 118202307 25765 + protein coding gene predicted gene 29106
Gm7200 1 118249863 to 118251025 1162 + pseudogene predicted gene 7200
Tsn 1 118298517 to 118311132 12615 - protein coding gene translin
Tssr8357 1 118299316 to 118299328 12 + TSS region transcription start site region 8357
Tssr13190 1 118299591 to 118299592 1 - TSS region transcription start site region 13190
Cpgi645 1 118310771 to 118311576 805 CpG island CpG island 645
Tssr13191 1 118311163 to 118311221 58 - TSS region transcription start site region 13191
Cpgi646 1 118321686 to 118322306 620 CpG island CpG island 646
Tssr8358 1 118321834 to 118321882 48 + TSS region transcription start site region 8358
Nifk 1 118321839 to 118333822 11983 + protein coding gene nucleolar protein interacting with the FHA domain of MKI67
Tssr8359 1 118321888 to 118321894 6 + TSS region transcription start site region 8359
D1Mit309 1 118342675 to 118342796 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 309
Gm28867 1 118359290 to 118362918 3628 + lincRNA gene predicted gene 28867
Cpgi647 1 118388667 to 118389779 1112 CpG island CpG island 647
Tssr13192 1 118388862 to 118388888 26 - TSS region transcription start site region 13192
Clasp1 1 118389058 to 118609462 220404 + protein coding gene CLIP associating protein 1
Tssr8360 1 118389423 to 118389465 42 + TSS region transcription start site region 8360
Tssr8361 1 118389468 to 118389481 13 + TSS region transcription start site region 8361
Cpgi648 1 118389958 to 118390255 297 CpG island CpG island 648
Tssr8362 1 118391224 to 118391230 6 + TSS region transcription start site region 8362
Tssr8363 1 118413841 to 118413845 4 + TSS region transcription start site region 8363
Gm26080 1 118453355 to 118453485 130 - snoRNA gene predicted gene, 26080
2900060B14Rik 1 118458669 to 118459265 596 - antisense lncRNA gene RIKEN cDNA 2900060B14 gene
Gm22710 1 118459141 to 118459265 124 - snRNA gene predicted gene, 22710
Cpgi649 1 118459177 to 118459998 821 CpG island CpG island 649
Tssr13193 1 118459263 to 118459267 4 - TSS region transcription start site region 13193
Tssr8364 1 118459587 to 118459621 34 + TSS region transcription start site region 8364
Tssr8365 1 118469809 to 118469820 11 + TSS region transcription start site region 8365
Gm28466 1 118478604 to 118479591 987 - pseudogene predicted gene 28466