Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:11374084-12716033

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr10970 1 11395462 to 11395499 37 - TSS region transcription start site region 10970
Tssr10971 1 11401271 to 11401277 6 - TSS region transcription start site region 10971
Cpgi36 1 11413874 to 11414618 744 CpG island CpG island 36
Tssr5945 1 11414089 to 11414146 57 + TSS region transcription start site region 5945
A830018L16Rik 1 11414105 to 11975901 561796 + protein coding gene RIKEN cDNA A830018L16 gene
Tssr5946 1 11414184 to 11414248 64 + TSS region transcription start site region 5946
Tssr5947 1 11414265 to 11414331 66 + TSS region transcription start site region 5947
Gm38178 1 11416918 to 11419388 2470 + unclassified gene predicted gene, 38178
D1Mit429 1 11499312 to 11499412 100 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 429
D1Mit1 1 11515502 to 11515626 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1
Gm29273 1 11608139 to 11608400 261 - pseudogene predicted gene 29273
Gm38069 1 11704207 to 11706350 2143 + unclassified gene predicted gene, 38069
D1Mit294 1 11741307 to 11741452 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 294
Gm30898 1 11979540 to 11991123 11583 + lncRNA gene predicted gene, 30898
Gm30974 1 12029084 to 12061033 31949 - lncRNA gene predicted gene, 30974
Gm7560 1 12120960 to 12121832 872 + pseudogene predicted gene 7560
D1Mit160.1 1 12125630 to 12125765 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 160.1
D1Mit160 1 12125786 to 12125924 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 160
Gm22633 1 12374936 to 12375042 106 + snRNA gene predicted gene, 22633
Gm39591 1 12423687 to 12432474 8787 - lncRNA gene predicted gene, 39591
Mir6341 1 12425986 to 12426106 120 + miRNA gene microRNA 6341
Gm2383 1 12565577 to 12566383 806 + pseudogene predicted gene 2383
Tssr10 1 12615768 to 12615770 2 + TSS region transcription start site region 10
D1Mit275 1 12633679 to 12633766 87 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 275
Gm6216 1 12655867 to 12656553 686 + pseudogene predicted gene 6216
Gm17644 1 12667563 to 12673090 5527 + lincRNA gene predicted gene, 17644
Gm29663 1 12670324 to 12671176 852 - lincRNA gene predicted gene 29663
Sulf1 1 12692277 to 12861192 168915 + protein coding gene sulfatase 1
Tssr5948 1 12692358 to 12692365 7 + TSS region transcription start site region 5948
Tssr5949 1 12692405 to 12692419 14 + TSS region transcription start site region 5949
Tssr5950 1 12692433 to 12692485 52 + TSS region transcription start site region 5950
Tssr5951 1 12692489 to 12692539 50 + TSS region transcription start site region 5951
Tssr5952 1 12692542 to 12692554 12 + TSS region transcription start site region 5952
Tssr5953 1 12692569 to 12692585 16 + TSS region transcription start site region 5953
Tssr10972 1 12693371 to 12693396 25 - TSS region transcription start site region 10972