Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:113379702-117989868

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D1Mit187 1 113555836 to 113555982 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 187
Gm17946 1 113565446 to 113565983 537 - pseudogene predicted gene, 17946
Gm18181 1 113582771 to 113583506 735 - pseudogene predicted gene, 18181
Cd8mts2 1 113690656 to 113690827 171 QTL CD8 memory T cell subset 2
D1Nds2 1 113690656 to 113690827 171 DNA segment DNA segment, Chr 1, Nuffield Department of Surgery 2
Gm24937 1 113717914 to 113718047 133 - snoRNA gene predicted gene, 24937
D1Mit441 1 113884311 to 113884415 104 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 441
9330185C12Rik 1 113891385 to 113964134 72749 - lincRNA gene RIKEN cDNA 9330185C12 gene
Tssr13189 1 113904074 to 113904081 7 - TSS region transcription start site region 13189
Gm32985 1 113930903 to 113935304 4401 - lncRNA gene predicted gene, 32985
Gm41933 1 113942790 to 113969982 27192 + lncRNA gene predicted gene, 41933
Tir3a 1 114126256 to 114126460 204 QTL trypanosome infection response 3a
Tli1 1 114126256 to 143821286 29695030 heritable phenotypic marker T lymphoma induced 1
D1Mit87 1 114126256 to 114126460 204 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 87
Gm33042 1 114860188 to 114863089 2901 - lncRNA gene predicted gene, 33042
Gm4854 1 115219190 to 115219763 573 - pseudogene predicted gene 4854
D1Mit469 1 115272440 to 115272588 148 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-469
D1Mit387 1 115332636 to 115332760 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 387
D1Mit285 1 115592434 to 115592559 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 285
Gm17916 1 115669409 to 115670583 1174 - pseudogene predicted gene, 17916
Cpgi644 1 115684702 to 115684868 166 CpG island CpG island 644
Tssr8354 1 115684727 to 115684744 17 + TSS region transcription start site region 8354
Cntnap5a 1 115684756 to 116587323 902567 + protein coding gene contactin associated protein-like 5A
Tssr178 1 115684954 to 115684958 4 + TSS region transcription start site region 178
Tssr8355 1 115826322 to 115826327 5 + TSS region transcription start site region 8355
Tssr8356 1 115923977 to 115923983 6 + TSS region transcription start site region 8356
Tssr179 1 116182043 to 116182046 3 - TSS region transcription start site region 179
Gm23393 1 116394342 to 116394413 71 - miRNA gene predicted gene, 23393
Pbbcp1 1 116579930 to 116580115 185 QTL peripheral blood B cell percentage 1
D1Mit188 1 116579930 to 116580115 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 188
D1Mit340 1 116616221 to 116616406 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 340
Gm28263 1 116633777 to 116634176 399 + pseudogene predicted gene 28263
Gm19965 1 116802983 to 116823410 20427 + protein coding gene predicted gene, 19965
D1Mit310 1 116987606 to 116987710 104 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 310
D1Mit1014 1 117198790 to 117198902 112 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 1014
D1Mit1015 1 117198872 to 117199035 163 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1015
Led2 1 117267351 to 85768306 -31499045 QTL late embryonic death 2
Gm17777 1 117392257 to 117393532 1275 - pseudogene predicted gene, 17777
Gm24030 1 117536301 to 117536464 163 + snRNA gene predicted gene, 24030
Gm27785 1 117561230 to 117561339 109 + miRNA gene predicted gene, 27785
Gm28361 1 117578391 to 117578864 473 + pseudogene predicted gene 28361
Zfp813-ps 1 117604158 to 117627062 22904 + pseudogene zinc finger protein 813, pseudogene
Gm28362 1 117662291 to 117678373 16082 + pseudogene predicted gene 28362
Gm28363 1 117726867 to 117727955 1088 + protein coding gene predicted gene 28363
Gm28359 1 117741367 to 117768622 27255 + pseudogene predicted gene 28359
Gm18182 1 117747031 to 117751372 4341 - pseudogene predicted gene, 18182
B020011L13Rik 1 117781135 to 117803359 22224 + protein coding gene RIKEN cDNA B020011L13 gene
Gm28360 1 117830081 to 117854496 24415 + protein coding gene predicted gene 28360
Gm28169 1 117842962 to 117843306 344 + pseudogene predicted gene 28169
Gm7195 1 117898101 to 117899701 1600 + pseudogene predicted gene 7195
Gm28168 1 117928015 to 117949988 21973 + protein coding gene predicted gene 28168
Gm7145 1 117965939 to 117986884 20945 + protein coding gene predicted gene 7145