Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:106178118-106858129

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phlpp1 1 106171869 to 106394245 222376 + protein coding gene PH domain and leucine rich repeat protein phosphatase 1
Tssr8296 1 106178534 to 106178548 14 + TSS region transcription start site region 8296
Tssr8297 1 106194439 to 106194442 3 + TSS region transcription start site region 8297
Tssr8298 1 106201863 to 106201864 1 + TSS region transcription start site region 8298
Tssr8299 1 106206571 to 106206573 2 + TSS region transcription start site region 8299
Tssr8300 1 106211496 to 106211508 12 + TSS region transcription start site region 8300
Tssr8301 1 106213661 to 106213685 24 + TSS region transcription start site region 8301
Tssr8302 1 106214424 to 106214438 14 + TSS region transcription start site region 8302
Gm38235 1 106219314 to 106224265 4951 + unclassified gene predicted gene, 38235
Tssr8303 1 106223902 to 106223909 7 + TSS region transcription start site region 8303
Tssr8304 1 106228180 to 106228191 11 + TSS region transcription start site region 8304
Tssr8305 1 106230724 to 106230737 13 + TSS region transcription start site region 8305
Tssr8306 1 106230803 to 106230815 12 + TSS region transcription start site region 8306
Tssr8307 1 106230850 to 106230858 8 + TSS region transcription start site region 8307
Tssr8308 1 106244981 to 106244987 6 + TSS region transcription start site region 8308
9430090L19Rik 1 106245574 to 106247062 1488 unclassified gene RIKEN cDNA 9430090L19 gene
Tssr8309 1 106251858 to 106251876 18 + TSS region transcription start site region 8309
Tssr8310 1 106317214 to 106317243 29 + TSS region transcription start site region 8310
Tssr8311 1 106318638 to 106318650 12 + TSS region transcription start site region 8311
Tssr8312 1 106318700 to 106318707 7 + TSS region transcription start site region 8312
Tssr8313 1 106334539 to 106334580 41 + TSS region transcription start site region 8313
Tssr8314 1 106369899 to 106369901 2 + TSS region transcription start site region 8314
A530053M12Rik 1 106400178 to 106401987 1809 - lincRNA gene RIKEN cDNA A530053M12 gene
Tssr8315 1 106407310 to 106407316 6 + TSS region transcription start site region 8315
Tssr174 1 106439506 to 106439518 12 + TSS region transcription start site region 174
Gm6651 1 106439600 to 106439870 270 + pseudogene predicted gene 6651
Tssr13143 1 106515528 to 106515543 15 - TSS region transcription start site region 13143
Tssr8316 1 106518118 to 106518129 11 + TSS region transcription start site region 8316
Gm41928 1 106520131 to 106529442 9311 + lncRNA gene predicted gene, 41928
Lrncs1 1 106538178 to 106714274 176096 QTL learning-conditioned stimulus 1
Bcl2 1 106538178 to 106714274 176096 - protein coding gene B cell leukemia/lymphoma 2
Tssr8317 1 106541938 to 106541976 38 + TSS region transcription start site region 8317
D630008O14Rik 1 106541943 to 106575045 33102 + antisense lncRNA gene RIKEN cDNA D630008O14 gene
D1Mit515 1 106543050 to 106543273 223 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-515
Tssr13144 1 106543295 to 106543306 11 - TSS region transcription start site region 13144
Mir3473f 1 106546496 to 106546631 135 - miRNA gene microRNA 3473f
D1Mit163 1 106584134 to 106584260 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 163
Tssr13145 1 106594439 to 106594453 14 - TSS region transcription start site region 13145
Gm37053 1 106604784 to 106606870 2086 - lncRNA gene predicted gene, 37053
Tssr13146 1 106606791 to 106606794 3 - TSS region transcription start site region 13146
Tssr13147 1 106608519 to 106608523 4 - TSS region transcription start site region 13147
Tssr13148 1 106642213 to 106642216 3 - TSS region transcription start site region 13148
Tssr13149 1 106642264 to 106642275 11 - TSS region transcription start site region 13149
Tssr13150 1 106664269 to 106664273 4 - TSS region transcription start site region 13150
Tssr13151 1 106695711 to 106695725 14 - TSS region transcription start site region 13151
Tssr13152 1 106705519 to 106705523 4 - TSS region transcription start site region 13152
Tssr13153 1 106705832 to 106705835 3 - TSS region transcription start site region 13153
Tssr13154 1 106711575 to 106711588 13 - TSS region transcription start site region 13154
Tssr13155 1 106711598 to 106711609 11 - TSS region transcription start site region 13155
Cpgi636 1 106712342 to 106712940 598 CpG island CpG island 636
Tssr13156 1 106712359 to 106712384 25 - TSS region transcription start site region 13156
Tssr13157 1 106712388 to 106712428 40 - TSS region transcription start site region 13157
Tssr13158 1 106712429 to 106712456 27 - TSS region transcription start site region 13158
Tssr8318 1 106712546 to 106712557 11 + TSS region transcription start site region 8318
Cpgi637 1 106713597 to 106714914 1317 CpG island CpG island 637
Tssr13159 1 106713915 to 106713924 9 - TSS region transcription start site region 13159
Tssr13160 1 106713962 to 106714049 87 - TSS region transcription start site region 13160
Tssr13161 1 106714217 to 106714330 113 - TSS region transcription start site region 13161
Kdsr 1 106720459 to 106759727 39268 - protein coding gene 3-ketodihydrosphingosine reductase
Tssr13162 1 106724481 to 106724484 3 - TSS region transcription start site region 13162
Tssr13163 1 106744373 to 106744381 8 - TSS region transcription start site region 13163
Cpgi638 1 106759207 to 106760124 917 CpG island CpG island 638
Tssr13164 1 106759651 to 106759658 7 - TSS region transcription start site region 13164
Tssr13165 1 106759660 to 106759688 28 - TSS region transcription start site region 13165
Tssr13166 1 106759693 to 106759725 32 - TSS region transcription start site region 13166
Tssr13167 1 106759727 to 106759748 21 - TSS region transcription start site region 13167
Tssr13168 1 106768979 to 106768984 5 - TSS region transcription start site region 13168
Vps4b 1 106770788 to 106796725 25937 - protein coding gene vacuolar protein sorting 4B
Cpgi639 1 106796130 to 106796894 764 CpG island CpG island 639
Tssr13169 1 106796609 to 106796669 60 - TSS region transcription start site region 13169
Tssr13170 1 106796687 to 106796713 26 - TSS region transcription start site region 13170