Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:105998700-106638707

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zcchc2 1 105990406 to 106034074 43668 + protein coding gene zinc finger, CCHC domain containing 2
Tssr8288 1 106002843 to 106002848 5 + TSS region transcription start site region 8288
Tssr8289 1 106022137 to 106022146 9 + TSS region transcription start site region 8289
Tssr8290 1 106026379 to 106026382 3 + TSS region transcription start site region 8290
Tssr8291 1 106033647 to 106033691 44 + TSS region transcription start site region 8291
Gm37372 1 106072584 to 106075894 3310 - unclassified gene predicted gene, 37372
Gm26509 1 106090068 to 106091015 947 + pseudogene predicted gene, 26509
Gm20753 1 106152625 to 106171524 18899 - lincRNA gene predicted gene, 20753
Cpgi635 1 106171357 to 106173530 2173 CpG island CpG island 635
Tssr8292 1 106171650 to 106171729 79 + TSS region transcription start site region 8292
Tssr8293 1 106171773 to 106171879 106 + TSS region transcription start site region 8293
Phlpp1 1 106171869 to 106394245 222376 + protein coding gene PH domain and leucine rich repeat protein phosphatase 1
Tssr8294 1 106171882 to 106171896 14 + TSS region transcription start site region 8294
Tssr8295 1 106171897 to 106171911 14 + TSS region transcription start site region 8295
Tssr8296 1 106178534 to 106178548 14 + TSS region transcription start site region 8296
Tssr8297 1 106194439 to 106194442 3 + TSS region transcription start site region 8297
Tssr8298 1 106201863 to 106201864 1 + TSS region transcription start site region 8298
Tssr8299 1 106206571 to 106206573 2 + TSS region transcription start site region 8299
Tssr8300 1 106211496 to 106211508 12 + TSS region transcription start site region 8300
Tssr8301 1 106213661 to 106213685 24 + TSS region transcription start site region 8301
Tssr8302 1 106214424 to 106214438 14 + TSS region transcription start site region 8302
Gm38235 1 106219314 to 106224265 4951 + unclassified gene predicted gene, 38235
Tssr8303 1 106223902 to 106223909 7 + TSS region transcription start site region 8303
Tssr8304 1 106228180 to 106228191 11 + TSS region transcription start site region 8304
Tssr8305 1 106230724 to 106230737 13 + TSS region transcription start site region 8305
Tssr8306 1 106230803 to 106230815 12 + TSS region transcription start site region 8306
Tssr8307 1 106230850 to 106230858 8 + TSS region transcription start site region 8307
Tssr8308 1 106244981 to 106244987 6 + TSS region transcription start site region 8308
9430090L19Rik 1 106245574 to 106247062 1488 unclassified gene RIKEN cDNA 9430090L19 gene
Tssr8309 1 106251858 to 106251876 18 + TSS region transcription start site region 8309
Tssr8310 1 106317214 to 106317243 29 + TSS region transcription start site region 8310
Tssr8311 1 106318638 to 106318650 12 + TSS region transcription start site region 8311
Tssr8312 1 106318700 to 106318707 7 + TSS region transcription start site region 8312
Tssr8313 1 106334539 to 106334580 41 + TSS region transcription start site region 8313
Tssr8314 1 106369899 to 106369901 2 + TSS region transcription start site region 8314
A530053M12Rik 1 106400178 to 106401987 1809 - lincRNA gene RIKEN cDNA A530053M12 gene
Tssr8315 1 106407310 to 106407316 6 + TSS region transcription start site region 8315
Tssr174 1 106439506 to 106439518 12 + TSS region transcription start site region 174
Gm6651 1 106439600 to 106439870 270 + pseudogene predicted gene 6651
Tssr13143 1 106515528 to 106515543 15 - TSS region transcription start site region 13143
Tssr8316 1 106518118 to 106518129 11 + TSS region transcription start site region 8316
Gm41928 1 106520131 to 106529442 9311 + lncRNA gene predicted gene, 41928
Lrncs1 1 106538178 to 106714274 176096 QTL learning-conditioned stimulus 1
Bcl2 1 106538178 to 106714274 176096 - protein coding gene B cell leukemia/lymphoma 2
Tssr8317 1 106541938 to 106541976 38 + TSS region transcription start site region 8317
D630008O14Rik 1 106541943 to 106575045 33102 + antisense lncRNA gene RIKEN cDNA D630008O14 gene
D1Mit515 1 106543050 to 106543273 223 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-515
Tssr13144 1 106543295 to 106543306 11 - TSS region transcription start site region 13144
Mir3473f 1 106546496 to 106546631 135 - miRNA gene microRNA 3473f
D1Mit163 1 106584134 to 106584260 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 163
Tssr13145 1 106594439 to 106594453 14 - TSS region transcription start site region 13145
Gm37053 1 106604784 to 106606870 2086 - lncRNA gene predicted gene, 37053
Tssr13146 1 106606791 to 106606794 3 - TSS region transcription start site region 13146
Tssr13147 1 106608519 to 106608523 4 - TSS region transcription start site region 13147