Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:105830724-106630737

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnfrsf11a 1 105780723 to 105847981 67258 + protein coding gene tumor necrosis factor receptor superfamily, member 11a, NFKB activator
Cpgi631 1 105844505 to 105844986 481 CpG island CpG island 631
Tssr8270 1 105845043 to 105845062 19 + TSS region transcription start site region 8270
Tssr8271 1 105845253 to 105845264 11 + TSS region transcription start site region 8271
Tssr8272 1 105846704 to 105846719 15 + TSS region transcription start site region 8272
Tssr8273 1 105846934 to 105846946 12 + TSS region transcription start site region 8273
Tssr8274 1 105847005 to 105847023 18 + TSS region transcription start site region 8274
Gm41926 1 105863846 to 105877496 13650 + lncRNA gene predicted gene, 41926
Tssr13133 1 105880863 to 105880868 5 - TSS region transcription start site region 13133
Cpgi632 1 105881069 to 105881280 211 CpG island CpG island 632
Gm37779 1 105887633 to 105891012 3379 - unclassified gene predicted gene, 37779
Gm41927 1 105903629 to 105934291 30662 - lncRNA gene predicted gene, 41927
Gm26214 1 105945554 to 105945660 106 + snRNA gene predicted gene, 26214
Gm18801 1 105955775 to 105956310 535 - pseudogene predicted gene, 18801
Tssr13134 1 105967036 to 105967082 46 - TSS region transcription start site region 13134
Tssr13135 1 105967714 to 105967786 72 - TSS region transcription start site region 13135
Gm7160 1 105979350 to 105990282 10932 - lincRNA gene predicted gene 7160
Tssr8275 1 105981094 to 105981103 9 + TSS region transcription start site region 8275
Tssr171 1 105981111 to 105981120 9 + TSS region transcription start site region 171
Tssr8276 1 105981555 to 105981584 29 + TSS region transcription start site region 8276
Tssr13136 1 105984145 to 105984158 13 - TSS region transcription start site region 13136
Tssr8277 1 105984421 to 105984463 42 + TSS region transcription start site region 8277
Tssr8278 1 105988346 to 105988378 32 + TSS region transcription start site region 8278
Tssr13137 1 105988829 to 105988841 12 - TSS region transcription start site region 13137
Cpgi633 1 105989716 to 105992051 2335 CpG island CpG island 633
Tssr8279 1 105989785 to 105989798 13 + TSS region transcription start site region 8279
Tssr13138 1 105990064 to 105990089 25 - TSS region transcription start site region 13138
Tssr13139 1 105990093 to 105990113 20 - TSS region transcription start site region 13139
Tssr8280 1 105990188 to 105990209 21 + TSS region transcription start site region 8280
Tssr13140 1 105990225 to 105990238 13 - TSS region transcription start site region 13140
Tssr13141 1 105990243 to 105990275 32 - TSS region transcription start site region 13141
Tssr13142 1 105990277 to 105990296 19 - TSS region transcription start site region 13142
Tssr8281 1 105990384 to 105990498 114 + TSS region transcription start site region 8281
Zcchc2 1 105990406 to 106034074 43668 + protein coding gene zinc finger, CCHC domain containing 2
Tssr8282 1 105990652 to 105990718 66 + TSS region transcription start site region 8282
Tssr172 1 105990721 to 105990750 29 + TSS region transcription start site region 172
Tssr8283 1 105990752 to 105990772 20 + TSS region transcription start site region 8283
Tssr8284 1 105990776 to 105990813 37 + TSS region transcription start site region 8284
Tssr173 1 105990817 to 105990831 14 + TSS region transcription start site region 173
Tssr8285 1 105990973 to 105990999 26 + TSS region transcription start site region 8285
Tssr8286 1 105991515 to 105991569 54 + TSS region transcription start site region 8286
Cpgi634 1 105993490 to 105994120 630 CpG island CpG island 634
Tssr8287 1 105993961 to 105993983 22 + TSS region transcription start site region 8287
Tssr8288 1 106002843 to 106002848 5 + TSS region transcription start site region 8288
Tssr8289 1 106022137 to 106022146 9 + TSS region transcription start site region 8289
Tssr8290 1 106026379 to 106026382 3 + TSS region transcription start site region 8290
Tssr8291 1 106033647 to 106033691 44 + TSS region transcription start site region 8291
Gm37372 1 106072584 to 106075894 3310 - unclassified gene predicted gene, 37372
Gm26509 1 106090068 to 106091015 947 + pseudogene predicted gene, 26509
Gm20753 1 106152625 to 106171524 18899 - lincRNA gene predicted gene, 20753
Cpgi635 1 106171357 to 106173530 2173 CpG island CpG island 635
Tssr8292 1 106171650 to 106171729 79 + TSS region transcription start site region 8292
Tssr8293 1 106171773 to 106171879 106 + TSS region transcription start site region 8293
Phlpp1 1 106171869 to 106394245 222376 + protein coding gene PH domain and leucine rich repeat protein phosphatase 1
Tssr8294 1 106171882 to 106171896 14 + TSS region transcription start site region 8294
Tssr8295 1 106171897 to 106171911 14 + TSS region transcription start site region 8295
Tssr8296 1 106178534 to 106178548 14 + TSS region transcription start site region 8296
Tssr8297 1 106194439 to 106194442 3 + TSS region transcription start site region 8297
Tssr8298 1 106201863 to 106201864 1 + TSS region transcription start site region 8298
Tssr8299 1 106206571 to 106206573 2 + TSS region transcription start site region 8299
Tssr8300 1 106211496 to 106211508 12 + TSS region transcription start site region 8300
Tssr8301 1 106213661 to 106213685 24 + TSS region transcription start site region 8301
Tssr8302 1 106214424 to 106214438 14 + TSS region transcription start site region 8302
Gm38235 1 106219314 to 106224265 4951 + unclassified gene predicted gene, 38235
Tssr8303 1 106223902 to 106223909 7 + TSS region transcription start site region 8303
Tssr8304 1 106228180 to 106228191 11 + TSS region transcription start site region 8304
Tssr8305 1 106230724 to 106230737 13 + TSS region transcription start site region 8305
Tssr8306 1 106230803 to 106230815 12 + TSS region transcription start site region 8306
Tssr8307 1 106230850 to 106230858 8 + TSS region transcription start site region 8307
Tssr8308 1 106244981 to 106244987 6 + TSS region transcription start site region 8308
9430090L19Rik 1 106245574 to 106247062 1488 unclassified gene RIKEN cDNA 9430090L19 gene
Tssr8309 1 106251858 to 106251876 18 + TSS region transcription start site region 8309
Tssr8310 1 106317214 to 106317243 29 + TSS region transcription start site region 8310
Tssr8311 1 106318638 to 106318650 12 + TSS region transcription start site region 8311
Tssr8312 1 106318700 to 106318707 7 + TSS region transcription start site region 8312
Tssr8313 1 106334539 to 106334580 41 + TSS region transcription start site region 8313
Tssr8314 1 106369899 to 106369901 2 + TSS region transcription start site region 8314
A530053M12Rik 1 106400178 to 106401987 1809 - lincRNA gene RIKEN cDNA A530053M12 gene
Tssr8315 1 106407310 to 106407316 6 + TSS region transcription start site region 8315
Tssr174 1 106439506 to 106439518 12 + TSS region transcription start site region 174
Gm6651 1 106439600 to 106439870 270 + pseudogene predicted gene 6651
Tssr13143 1 106515528 to 106515543 15 - TSS region transcription start site region 13143
Tssr8316 1 106518118 to 106518129 11 + TSS region transcription start site region 8316
Gm41928 1 106520131 to 106529442 9311 + lncRNA gene predicted gene, 41928
Lrncs1 1 106538178 to 106714274 176096 QTL learning-conditioned stimulus 1
Bcl2 1 106538178 to 106714274 176096 - protein coding gene B cell leukemia/lymphoma 2
Tssr8317 1 106541938 to 106541976 38 + TSS region transcription start site region 8317
D630008O14Rik 1 106541943 to 106575045 33102 + antisense lncRNA gene RIKEN cDNA D630008O14 gene
D1Mit515 1 106543050 to 106543273 223 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-515
Tssr13144 1 106543295 to 106543306 11 - TSS region transcription start site region 13144
Mir3473f 1 106546496 to 106546631 135 - miRNA gene microRNA 3473f
D1Mit163 1 106584134 to 106584260 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 163
Tssr13145 1 106594439 to 106594453 14 - TSS region transcription start site region 13145
Gm37053 1 106604784 to 106606870 2086 - lncRNA gene predicted gene, 37053
Tssr13146 1 106606791 to 106606794 3 - TSS region transcription start site region 13146
Tssr13147 1 106608519 to 106608523 4 - TSS region transcription start site region 13147