Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:104779494-105458756

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdh20 1 104768819 to 104995481 226662 + protein coding gene cadherin 20
Tssr8253 1 104780923 to 104780926 3 + TSS region transcription start site region 8253
n-R5s216 1 104880924 to 104881035 111 - rRNA gene nuclear encoded rRNA 5S 216
Gm36969 1 104906523 to 104909331 2808 + unclassified gene predicted gene, 36969
Gm15699 1 104911431 to 104912333 902 - antisense lncRNA gene predicted gene 15699
Cpgi623 1 104984683 to 104984846 163 CpG island CpG island 623
Cpgi625 1 104993833 to 104994477 644 CpG island CpG island 625
Gm41925 1 105114494 to 105123756 9262 - lncRNA gene predicted gene, 41925
Gm29012 1 105116454 to 105127366 10912 + lincRNA gene predicted gene 29012
Tssr13123 1 105157853 to 105157860 7 - TSS region transcription start site region 13123
Tssr13124 1 105157866 to 105157882 16 - TSS region transcription start site region 13124
Tssr13125 1 105157896 to 105157905 9 - TSS region transcription start site region 13125
Gm29013 1 105244425 to 105244661 236 + pseudogene predicted gene 29013
Rnf152 1 105276914 to 105356710 79796 - protein coding gene ring finger protein 152
Tssr8254 1 105304905 to 105304906 1 + TSS region transcription start site region 8254
D1Mit135 1 105309586 to 105309760 174 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 135
Gm29014 1 105321121 to 105321446 325 + pseudogene predicted gene 29014
Cpgi626 1 105355786 to 105357021 1235 CpG island CpG island 626
Gm17634 1 105356007 to 105361737 5730 + antisense lncRNA gene predicted gene, 17634
Tssr13126 1 105356480 to 105356516 36 - TSS region transcription start site region 13126
Tssr13127 1 105356640 to 105356651 11 - TSS region transcription start site region 13127
Tssr13128 1 105356658 to 105356714 56 - TSS region transcription start site region 13128
Tssr8255 1 105356717 to 105356768 51 + TSS region transcription start site region 8255
Tssr8256 1 105356769 to 105356786 17 + TSS region transcription start site region 8256
Tssr13129 1 105356769 to 105356788 19 - TSS region transcription start site region 13129
Tssr8257 1 105356846 to 105356857 11 + TSS region transcription start site region 8257
Tssr13130 1 105356934 to 105356963 29 - TSS region transcription start site region 13130
Tssr8258 1 105357059 to 105357089 30 + TSS region transcription start site region 8258
D1Mit307 1 105359851 to 105359961 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 307
Gm28403 1 105406460 to 105433796 27336 - sense overlapping lncRNA gene predicted gene 28403
Tssr8259 1 105455967 to 105455976 9 + TSS region transcription start site region 8259
Gm3608 1 105455971 to 105458829 2858 + pseudogene predicted gene 3608
Tssr8260 1 105456544 to 105456551 7 + TSS region transcription start site region 8260