Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:104701769-106011786

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi622 1 104768430 to 104769452 1022 CpG island CpG island 622
Tssr8250 1 104768510 to 104768526 16 + TSS region transcription start site region 8250
Tssr8251 1 104768596 to 104768608 12 + TSS region transcription start site region 8251
Tssr8252 1 104768796 to 104768823 27 + TSS region transcription start site region 8252
Cdh20 1 104768819 to 104995481 226662 + protein coding gene cadherin 20
Gm38031 1 104776114 to 104779128 3014 + unclassified gene predicted gene, 38031
Tssr8253 1 104780923 to 104780926 3 + TSS region transcription start site region 8253
n-R5s216 1 104880924 to 104881035 111 - rRNA gene nuclear encoded rRNA 5S 216
Gm36969 1 104906523 to 104909331 2808 + unclassified gene predicted gene, 36969
Gm15699 1 104911431 to 104912333 902 - antisense lncRNA gene predicted gene 15699
Cpgi623 1 104984683 to 104984846 163 CpG island CpG island 623
Cpgi625 1 104993833 to 104994477 644 CpG island CpG island 625
Gm41925 1 105114494 to 105123756 9262 - lncRNA gene predicted gene, 41925
Gm29012 1 105116454 to 105127366 10912 + lincRNA gene predicted gene 29012
Tssr13123 1 105157853 to 105157860 7 - TSS region transcription start site region 13123
Tssr13124 1 105157866 to 105157882 16 - TSS region transcription start site region 13124
Tssr13125 1 105157896 to 105157905 9 - TSS region transcription start site region 13125
Gm29013 1 105244425 to 105244661 236 + pseudogene predicted gene 29013
Rnf152 1 105276914 to 105356710 79796 - protein coding gene ring finger protein 152
Tssr8254 1 105304905 to 105304906 1 + TSS region transcription start site region 8254
D1Mit135 1 105309586 to 105309760 174 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 135
Gm29014 1 105321121 to 105321446 325 + pseudogene predicted gene 29014
Cpgi626 1 105355786 to 105357021 1235 CpG island CpG island 626
Gm17634 1 105356007 to 105361737 5730 + antisense lncRNA gene predicted gene, 17634
Tssr13126 1 105356480 to 105356516 36 - TSS region transcription start site region 13126
Tssr13127 1 105356640 to 105356651 11 - TSS region transcription start site region 13127
Tssr13128 1 105356658 to 105356714 56 - TSS region transcription start site region 13128
Tssr8255 1 105356717 to 105356768 51 + TSS region transcription start site region 8255
Tssr13129 1 105356769 to 105356788 19 - TSS region transcription start site region 13129
Tssr8256 1 105356769 to 105356786 17 + TSS region transcription start site region 8256
Tssr8257 1 105356846 to 105356857 11 + TSS region transcription start site region 8257
Tssr13130 1 105356934 to 105356963 29 - TSS region transcription start site region 13130
Tssr8258 1 105357059 to 105357089 30 + TSS region transcription start site region 8258
D1Mit307 1 105359851 to 105359961 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 307
Gm28403 1 105406460 to 105433796 27336 - sense overlapping lncRNA gene predicted gene 28403
Tssr8259 1 105455967 to 105455976 9 + TSS region transcription start site region 8259
Gm3608 1 105455971 to 105458829 2858 + pseudogene predicted gene 3608
Tssr8260 1 105456544 to 105456551 7 + TSS region transcription start site region 8260
Pign 1 105518422 to 105663677 145255 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class N
Gm28404 1 105564126 to 105564578 452 - sense intronic lncRNA gene predicted gene 28404
Gm20302 1 105574537 to 105574811 274 + pseudogene predicted gene, 20302
Gm22426 1 105574687 to 105574782 95 + miRNA gene predicted gene, 22426
Gm8004 1 105615742 to 105616358 616 + pseudogene predicted gene 8004
Cpgi627 1 105663256 to 105664830 1574 CpG island CpG island 627
Tssr13131 1 105663641 to 105663660 19 - TSS region transcription start site region 13131
Tssr13132 1 105663665 to 105663680 15 - TSS region transcription start site region 13132
Relch 1 105663841 to 105755131 91290 + protein coding gene RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
Tssr8261 1 105663855 to 105663866 11 + TSS region transcription start site region 8261
Tssr8262 1 105663869 to 105663920 51 + TSS region transcription start site region 8262
Tssr8263 1 105669330 to 105669338 8 + TSS region transcription start site region 8263
Tssr8264 1 105669809 to 105669812 3 + TSS region transcription start site region 8264
Tssr8265 1 105675650 to 105675654 4 + TSS region transcription start site region 8265
Tssr8266 1 105678173 to 105678177 4 + TSS region transcription start site region 8266
Tssr8267 1 105701404 to 105701408 4 + TSS region transcription start site region 8267
Gm37566 1 105708573 to 105712927 4354 + unclassified gene predicted gene, 37566
Cpgi628 1 105764194 to 105764450 256 CpG island CpG island 628
Gm10193 1 105764444 to 105764674 230 + pseudogene predicted gene 10193
Cpgi629 1 105780145 to 105781288 1143 CpG island CpG island 629
Tssr8268 1 105780693 to 105780762 69 + TSS region transcription start site region 8268
Tnfrsf11a 1 105780723 to 105847981 67258 + protein coding gene tumor necrosis factor receptor superfamily, member 11a, NFKB activator
Tssr8269 1 105788070 to 105788076 6 + TSS region transcription start site region 8269
Cpgi630 1 105813590 to 105813880 290 CpG island CpG island 630
Cpgi631 1 105844505 to 105844986 481 CpG island CpG island 631
Tssr8270 1 105845043 to 105845062 19 + TSS region transcription start site region 8270
Tssr8271 1 105845253 to 105845264 11 + TSS region transcription start site region 8271
Tssr8272 1 105846704 to 105846719 15 + TSS region transcription start site region 8272
Tssr8273 1 105846934 to 105846946 12 + TSS region transcription start site region 8273
Tssr8274 1 105847005 to 105847023 18 + TSS region transcription start site region 8274
Gm41926 1 105863846 to 105877496 13650 + lncRNA gene predicted gene, 41926
Tssr13133 1 105880863 to 105880868 5 - TSS region transcription start site region 13133
Cpgi632 1 105881069 to 105881280 211 CpG island CpG island 632
Gm37779 1 105887633 to 105891012 3379 - unclassified gene predicted gene, 37779
Gm41927 1 105903629 to 105934291 30662 - lncRNA gene predicted gene, 41927
Gm26214 1 105945554 to 105945660 106 + snRNA gene predicted gene, 26214
Gm18801 1 105955775 to 105956310 535 - pseudogene predicted gene, 18801
Tssr13134 1 105967036 to 105967082 46 - TSS region transcription start site region 13134
Tssr13135 1 105967714 to 105967786 72 - TSS region transcription start site region 13135
Gm7160 1 105979350 to 105990282 10932 - lincRNA gene predicted gene 7160
Tssr8275 1 105981094 to 105981103 9 + TSS region transcription start site region 8275
Tssr171 1 105981111 to 105981120 9 + TSS region transcription start site region 171
Tssr8276 1 105981555 to 105981584 29 + TSS region transcription start site region 8276
Tssr13136 1 105984145 to 105984158 13 - TSS region transcription start site region 13136
Tssr8277 1 105984421 to 105984463 42 + TSS region transcription start site region 8277
Tssr8278 1 105988346 to 105988378 32 + TSS region transcription start site region 8278
Tssr13137 1 105988829 to 105988841 12 - TSS region transcription start site region 13137
Cpgi633 1 105989716 to 105992051 2335 CpG island CpG island 633
Tssr8279 1 105989785 to 105989798 13 + TSS region transcription start site region 8279
Tssr13138 1 105990064 to 105990089 25 - TSS region transcription start site region 13138
Tssr13139 1 105990093 to 105990113 20 - TSS region transcription start site region 13139
Tssr8280 1 105990188 to 105990209 21 + TSS region transcription start site region 8280
Tssr13140 1 105990225 to 105990238 13 - TSS region transcription start site region 13140
Tssr13141 1 105990243 to 105990275 32 - TSS region transcription start site region 13141
Tssr13142 1 105990277 to 105990296 19 - TSS region transcription start site region 13142
Tssr8281 1 105990384 to 105990498 114 + TSS region transcription start site region 8281
Zcchc2 1 105990406 to 106034074 43668 + protein coding gene zinc finger, CCHC domain containing 2
Tssr8282 1 105990652 to 105990718 66 + TSS region transcription start site region 8282
Tssr172 1 105990721 to 105990750 29 + TSS region transcription start site region 172
Tssr8283 1 105990752 to 105990772 20 + TSS region transcription start site region 8283
Tssr8284 1 105990776 to 105990813 37 + TSS region transcription start site region 8284
Tssr173 1 105990817 to 105990831 14 + TSS region transcription start site region 173
Tssr8285 1 105990973 to 105990999 26 + TSS region transcription start site region 8285
Tssr8286 1 105991515 to 105991569 54 + TSS region transcription start site region 8286
Cpgi634 1 105993490 to 105994120 630 CpG island CpG island 634
Tssr8287 1 105993961 to 105993983 22 + TSS region transcription start site region 8287
Tssr8288 1 106002843 to 106002848 5 + TSS region transcription start site region 8288