Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:102175680-105835815

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr13120 1 102189077 to 102189084 7 - TSS region transcription start site region 13120
Gm23036 1 102413923 to 102414021 98 - snoRNA gene predicted gene, 23036
Gm3116 1 102449353 to 102537656 88303 + pseudogene predicted gene 3116
Gm20281 1 102458656 to 102458922 266 - pseudogene predicted gene, 20281
D1Mit86 1 102581465 to 102581623 158 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 86
Tssr13121 1 102628196 to 102628234 38 - TSS region transcription start site region 13121
Tssr13122 1 102628264 to 102628293 29 - TSS region transcription start site region 13122
Gm22034 1 102953415 to 102953548 133 - snoRNA gene predicted gene, 22034
Gm18728 1 103171926 to 103268593 96667 + pseudogene predicted gene, 18728
D1Mit467 1 103196704 to 103196839 135 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-467
Gm23965 1 103236626 to 103236767 141 - snoRNA gene predicted gene, 23965
Ecgnq1 1 103350337 to 120607496 17257159 QTL eccrine gland number QTL 1
Gm29141 1 103363986 to 103423658 59672 + pseudogene predicted gene 29141
Aath1 1 103556204 to 103556204 0 QTL aortic arch atherosclerosis 1
Gm37789 1 103724345 to 103727233 2888 + unclassified gene predicted gene, 37789
Nobq3 1 104005680 to 191493284 87487604 QTL New Zealand obese QTL 3
D1Mit468 1 104005680 to 104005815 135 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-468
D1Mit490 1 104069240 to 104069360 120 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 490
Gm41924 1 104304699 to 104322994 18295 - lncRNA gene predicted gene, 41924
Gm18447 1 104311721 to 104312027 306 + pseudogene predicted gene, 18447
Gm29140 1 104470941 to 104471416 475 - pseudogene predicted gene 29140
Gm23537 1 104485957 to 104486286 329 + unclassified non-coding RNA gene predicted gene, 23537
Gm5260 1 104513001 to 104513766 765 + pseudogene predicted gene 5260
Gm29592 1 104609524 to 104610883 1359 + pseudogene predicted gene 29592
Gm29011 1 104632584 to 104633358 774 - pseudogene predicted gene 29011
Cpgi622 1 104768430 to 104769452 1022 CpG island CpG island 622
Tssr8250 1 104768510 to 104768526 16 + TSS region transcription start site region 8250
Tssr8251 1 104768596 to 104768608 12 + TSS region transcription start site region 8251
Tssr8252 1 104768796 to 104768823 27 + TSS region transcription start site region 8252
Cdh20 1 104768819 to 104995481 226662 + protein coding gene cadherin 20
Gm38031 1 104776114 to 104779128 3014 + unclassified gene predicted gene, 38031
Tssr8253 1 104780923 to 104780926 3 + TSS region transcription start site region 8253
n-R5s216 1 104880924 to 104881035 111 - rRNA gene nuclear encoded rRNA 5S 216
Gm36969 1 104906523 to 104909331 2808 + unclassified gene predicted gene, 36969
Gm15699 1 104911431 to 104912333 902 - antisense lncRNA gene predicted gene 15699
Cpgi623 1 104984683 to 104984846 163 CpG island CpG island 623
Cpgi625 1 104993833 to 104994477 644 CpG island CpG island 625
Gm41925 1 105114494 to 105123756 9262 - lncRNA gene predicted gene, 41925
Gm29012 1 105116454 to 105127366 10912 + lincRNA gene predicted gene 29012
Tssr13123 1 105157853 to 105157860 7 - TSS region transcription start site region 13123
Tssr13124 1 105157866 to 105157882 16 - TSS region transcription start site region 13124
Tssr13125 1 105157896 to 105157905 9 - TSS region transcription start site region 13125
Gm29013 1 105244425 to 105244661 236 + pseudogene predicted gene 29013
Rnf152 1 105276914 to 105356710 79796 - protein coding gene ring finger protein 152
Tssr8254 1 105304905 to 105304906 1 + TSS region transcription start site region 8254
D1Mit135 1 105309586 to 105309760 174 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 135
Gm29014 1 105321121 to 105321446 325 + pseudogene predicted gene 29014
Cpgi626 1 105355786 to 105357021 1235 CpG island CpG island 626
Gm17634 1 105356007 to 105361737 5730 + antisense lncRNA gene predicted gene, 17634
Tssr13126 1 105356480 to 105356516 36 - TSS region transcription start site region 13126
Tssr13127 1 105356640 to 105356651 11 - TSS region transcription start site region 13127
Tssr13128 1 105356658 to 105356714 56 - TSS region transcription start site region 13128
Tssr8255 1 105356717 to 105356768 51 + TSS region transcription start site region 8255
Tssr8256 1 105356769 to 105356786 17 + TSS region transcription start site region 8256
Tssr13129 1 105356769 to 105356788 19 - TSS region transcription start site region 13129
Tssr8257 1 105356846 to 105356857 11 + TSS region transcription start site region 8257
Tssr13130 1 105356934 to 105356963 29 - TSS region transcription start site region 13130
Tssr8258 1 105357059 to 105357089 30 + TSS region transcription start site region 8258
D1Mit307 1 105359851 to 105359961 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 307
Gm28403 1 105406460 to 105433796 27336 - sense overlapping lncRNA gene predicted gene 28403
Tssr8259 1 105455967 to 105455976 9 + TSS region transcription start site region 8259
Gm3608 1 105455971 to 105458829 2858 + pseudogene predicted gene 3608
Tssr8260 1 105456544 to 105456551 7 + TSS region transcription start site region 8260
Pign 1 105518422 to 105663677 145255 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class N
Gm28404 1 105564126 to 105564578 452 - sense intronic lncRNA gene predicted gene 28404
Gm20302 1 105574537 to 105574811 274 + pseudogene predicted gene, 20302
Gm22426 1 105574687 to 105574782 95 + miRNA gene predicted gene, 22426
Gm8004 1 105615742 to 105616358 616 + pseudogene predicted gene 8004
Cpgi627 1 105663256 to 105664830 1574 CpG island CpG island 627
Tssr13131 1 105663641 to 105663660 19 - TSS region transcription start site region 13131
Tssr13132 1 105663665 to 105663680 15 - TSS region transcription start site region 13132
Relch 1 105663841 to 105755131 91290 + protein coding gene RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
Tssr8261 1 105663855 to 105663866 11 + TSS region transcription start site region 8261
Tssr8262 1 105663869 to 105663920 51 + TSS region transcription start site region 8262
Tssr8263 1 105669330 to 105669338 8 + TSS region transcription start site region 8263
Tssr8264 1 105669809 to 105669812 3 + TSS region transcription start site region 8264
Tssr8265 1 105675650 to 105675654 4 + TSS region transcription start site region 8265
Tssr8266 1 105678173 to 105678177 4 + TSS region transcription start site region 8266
Tssr8267 1 105701404 to 105701408 4 + TSS region transcription start site region 8267
Gm37566 1 105708573 to 105712927 4354 + unclassified gene predicted gene, 37566
Cpgi628 1 105764194 to 105764450 256 CpG island CpG island 628
Gm10193 1 105764444 to 105764674 230 + pseudogene predicted gene 10193
Cpgi629 1 105780145 to 105781288 1143 CpG island CpG island 629
Tssr8268 1 105780693 to 105780762 69 + TSS region transcription start site region 8268
Tnfrsf11a 1 105780723 to 105847981 67258 + protein coding gene tumor necrosis factor receptor superfamily, member 11a, NFKB activator
Tssr8269 1 105788070 to 105788076 6 + TSS region transcription start site region 8269
Cpgi630 1 105813590 to 105813880 290 CpG island CpG island 630