Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000



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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Soa 6 syntenic heritable phenotypic marker sucrose octaacetate aversion
Soat1 1 156428108 to 156474328 46220 - protein coding gene sterol O-acyltransferase 1
Soat2 15 102150526 to 102163469 12943 + protein coding gene sterol O-acyltransferase 2
Sobp 10 43002500 to 43174530 172030 - protein coding gene sine oculis binding protein
soc 3 syntenic heritable phenotypic marker soft coat
Socs1 16 10783808 to 10785536 1728 - protein coding gene suppressor of cytokine signaling 1
Socs2 10 95385362 to 95417180 31818 - protein coding gene suppressor of cytokine signaling 2
Socs3 11 117966079 to 117970047 3968 - protein coding gene suppressor of cytokine signaling 3
Socs4 14 47277143 to 47291591 14448 + protein coding gene suppressor of cytokine signaling 4
Socs5 17 87107679 to 87137839 30160 + protein coding gene suppressor of cytokine signaling 5
Socs6 18 88865169 to 88894350 29181 - protein coding gene suppressor of cytokine signaling 6
Socs7 11 97362551 to 97398542 35991 + protein coding gene suppressor of cytokine signaling 7
Sod1 16 90220754 to 90226329 5575 + protein coding gene superoxide dismutase 1, soluble
Sod1m 13 110563377 to 99603460 -10959917 QTL superoxide dismutase 1, soluble, modifier
Sod2 17 13007839 to 13018119 10280 + protein coding gene superoxide dismutase 2, mitochondrial
Sod3 5 52363804 to 52369738 5934 + protein coding gene superoxide dismutase 3, extracellular
Soga1 2 157015799 to 157079254 63455 - protein coding gene suppressor of glucose, autophagy associated 1
Soga3 10 29143839 to 29199630 55791 + protein coding gene SOGA family member 3
Sohlh1 2 25842995 to 25847248 4253 - protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 1
Sohlh2 3 55182044 to 55209957 27913 + protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 2
Son 16 91647824 to 91679195 31371 + protein coding gene Son DNA binding protein
soo 2 syntenic heritable phenotypic marker sooty foot
Sorbs1 19 40294753 to 40513779 219026 - protein coding gene sorbin and SH3 domain containing 1
Sorbs2 8 45507788 to 45827906 320118 + protein coding gene sorbin and SH3 domain containing 2
Sorbs2os 8 45723325 to 45819297 95972 - antisense lncRNA gene sorbin and SH3 domain containing 2, opposite strand
Sorbs3 14 70180468 to 70211989 31521 - protein coding gene sorbin and SH3 domain containing 3
Sorcs1 19 50143299 to 50678646 535347 - protein coding gene sortilin-related VPS10 domain containing receptor 1
Sorcs2 5 36017180 to 36398139 380959 - protein coding gene sortilin-related VPS10 domain containing receptor 2
Sorcs3 19 48206025 to 48805505 599480 + protein coding gene sortilin-related VPS10 domain containing receptor 3
Sord 2 122234839 to 122265337 30498 + protein coding gene sorbitol dehydrogenase
Sorl1 9 41964718 to 42124289 159571 - protein coding gene sortilin-related receptor, LDLR class A repeats-containing
Sort1 3 108284082 to 108361511 77429 + protein coding gene sortilin 1
Sos1 17 80393752 to 80480453 86701 - protein coding gene SOS Ras/Rac guanine nucleotide exchange factor 1
Sos2 12 69583762 to 69681852 98090 - protein coding gene SOS Ras/Rho guanine nucleotide exchange factor 2
Sost 11 101962458 to 101967015 4557 - protein coding gene sclerostin
Sostdc1 12 36314169 to 36318452 4283 + protein coding gene sclerostin domain containing 1
Sowaha 11 53476578 to 53480195 3617 - protein coding gene sosondowah ankyrin repeat domain family member A
Sowahb 5 93041123 to 93045022 3899 - protein coding gene sosondowah ankyrin repeat domain family member B
Sowahc 10 59221953 to 59226434 4481 + protein coding gene sosondowah ankyrin repeat domain family member C
Sowahd X 37048845 to 37050418 1573 + protein coding gene sosondowah ankyrin repeat domain family member D
Sox1 8 12395519 to 12399555 4036 + protein coding gene SRY (sex determining region Y)-box 1
Sox10 15 79154913 to 79164490 9577 - protein coding gene SRY (sex determining region Y)-box 10
Sox10m2 3 syntenic QTL Sox10Dom modifier 2
Sox10m3 5 syntenic QTL Sox10Dom modifier 3
Sox10m4 8 syntenic QTL Sox10Dom modifier 4
Sox10m5 11 syntenic QTL Sox10Dom modifier 5
Sox11 12 27334264 to 27342574 8310 - protein coding gene SRY (sex determining region Y)-box 11
Sox11os 12 syntenic unclassified non-coding RNA gene SRY (sex determining region Y)-box 11, opposite strand
Sox12 2 152393611 to 152398046 4435 - protein coding gene SRY (sex determining region Y)-box 12
Sox13 1 133382300 to 133424212 41912 - protein coding gene SRY (sex determining region Y)-box 13
Sox14 9 99874106 to 99876170 2064 - protein coding gene SRY (sex determining region Y)-box 14
Sox15 11 69655314 to 69656727 1413 + protein coding gene SRY (sex determining region Y)-box 15
Sox16 11 syntenic protein coding gene SRY (sex determining region Y)-box 16
Sox17 1 4490931 to 4497354 6423 - protein coding gene SRY (sex determining region Y)-box 17
Sox18 2 181669837 to 181671640 1803 - protein coding gene SRY (sex determining region Y)-box 18
Sox19 UN syntenic protein coding gene SRY (sex determining region Y)-box 19
Sox1ot 8 12385771 to 12436732 50961 + sense overlapping lncRNA gene Sox1 overlapping transcript
Sox2 3 34650405 to 34652461 2056 + protein coding gene SRY (sex determining region Y)-box 2
Sox21 14 118233233 to 118237030 3797 - protein coding gene SRY (sex determining region Y)-box 21
Sox2ot 3 34560381 to 34677993 117612 + lncRNA gene SOX2 overlapping transcript (non-protein coding)
Sox3 X 60891366 to 60893430 2064 - protein coding gene SRY (sex determining region Y)-box 3
Sox30 11 45980310 to 46017994 37684 + protein coding gene SRY (sex determining region Y)-box 30
Sox4 13 28950716 to 28953682 2966 - protein coding gene SRY (sex determining region Y)-box 4
Sox4os 13 syntenic unclassified non-coding RNA gene SRY (sex determining region Y)-box 4, opposite strand
Sox5 6 143828425 to 144781977 953552 - protein coding gene SRY (sex determining region Y)-box 5
Sox5it 6 144670427 to 144672720 2293 - sense intronic lncRNA gene SRY (sex determining region Y)-box 5, intronic transcript
Sox5os1 6 144021908 to 144023778 1870 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 1
Sox5os2 6 144481225 to 144501416 20191 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 2
Sox5os3 6 144672868 to 144693832 20964 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 3
Sox5os4 6 144758805 to 144760071 1266 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 4
Sox5os5 6 144723565 to 144724907 1342 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 5
Sox6 7 115470872 to 116038796 567924 - protein coding gene SRY (sex determining region Y)-box 6
Sox6os 7 116031979 to 116032550 571 + antisense lncRNA gene SRY (sex determining region Y)-box 6, opposite strand
Sox7 14 63943706 to 63950732 7026 + protein coding gene SRY (sex determining region Y)-box 7
Sox8 17 25565893 to 25570686 4793 - protein coding gene SRY (sex determining region Y)-box 8
Sox9 11 112782224 to 112787760 5536 + protein coding gene SRY (sex determining region Y)-box 9