MPD: JaxKOMP-LAP measure: reaction_time

JaxKOMP-LAP phenotype measure: reaction_time_LD

MPD and LIMS short name	reaction_time_LD reaction_time
Phenotype description	latency to enter dark zone, 20 min test [s]
MPD and LIMS phenotype procedure	light-dark box light / dark View protocol
MPD measure ID, data type	101480 numeric data
Number of genotypes	124 genotypes completed with analytics available, both sexes
Age at testing	67-73wks Late Adult Phenotyping study LAP

Ontology mappings

Data points below are the computed genotype effect size for each KOMP genotype vs. C57BL6/NJ controls.

MULTIPLE GENOTYPE PROFILE PLOT

Dimensions Width: × Height: px

Plot Options Alphabetical Order Standard Error Show Effect Sizes RankZ

Significance Threshold p-Value Threshold Adjusted Unadjusted

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Genotype	Genotype Effect	Genotype Effect SE	Genotype Effect RankZ	Adjusted p-value	Unadjusted p-value

Abcd3^em1(IMPC)J -/-	-192.39	110.90	-1.3532	0.552	0.0956
Abhd17b^em1(IMPC)J -/-	-46.454	114.68	-0.090361	0.900	0.690
Acadsb^em1(IMPC)J -/-	50.624	95.344	0.70630	0.900	0.600
Acy1^em1(IMPC)J -/-	-36.591	56.380	0.010027	0.871	0.522
Adad2^em1(IMPC)J -/-	17.119	64.315	0.33716	0.905	0.792
Adamts14^em1(IMPC)J -/-	-167.04	664.59	-1.2160	0.917	0.843
Adamtsl4^em1(IMPC)J -/-	94.224	110.67	0.93072	0.803	0.403
Afmid^em1Llp -/-	23.619	95.239	0.44544	0.905	0.806
Agbl1^em1(IMPC)J/Mmjax -/-	271.32	122.80	1.7507	0.503	0.0365
Alg8^em1(IMPC)J/Mmjax -/+	74.255	160.85	0.75875	0.900	0.690
Alg9^em1(IMPC)J/Mmjax -/+	17.830	147.49	0.35846	0.941	0.905
Anapc1^em1(IMPC)J/Mmjax -/+	-22.525	143.91	0.17128	0.922	0.877
Apmap^em1(IMPC)J/Mmjax -/-	164.00	87.146	1.1359	0.552	0.0703
Arap3^em1(IMPC)J -/-	184.42	126.33	1.2160	0.591	0.158
AU040320^em1(IMPC)J -/-	59.063	143.96	0.73228	0.900	0.685
Brip1^em1(IMPC)J/Mmjax -/-	42.806	78.587	0.60678	0.900	0.591
C1qc^em1(IMPC)J -/-	175.64	118.02	1.1750	0.576	0.149
C7^em1(IMPC)J/Mmjax -/-	84.017	115.83	0.87055	0.868	0.476
Catsperz^{tm1.1(KOMP)Vlcg} -/-	-36.208	97.530	0.030084	0.905	0.713
Ccdc28a^{tm3b(EUCOMM)Wtsi}/2J -/-	-24.213	71.853	0.13072	0.905	0.738
Cdc42bpb^em1(IMPC)J -/+	-180.84	107.57	-1.3047	0.552	0.107
Cep135^em1(IMPC)J -/+	-125.86	107.11	-0.99446	0.693	0.252
Cgref1^em1(IMPC)J/Mmjax -/-	-79.779	71.985	-0.42340	0.695	0.280
Chmp7^em1(IMPC)J/Mmjax -/+	-43.984	207.64	-0.070243	0.922	0.867
Cldn13^em1(IMPC)J -/-	139.09	108.91	1.0279	0.662	0.215
Clptm1l^em1(IMPC)J/Mmjax -/-	-54.02	101.78	-0.17128	0.900	0.612
Cr2^em1Llp -/-	-86.816	103.24	-0.51293	0.803	0.408
Diaph3^{tm1b(KOMP)Mbp}/2J -/+	78.509	60.423	0.81338	0.657	0.207
Dnajb2^em1(IMPC)J -/-	31.886	97.169	0.53594	0.905	0.746
Dnase1l2^em1(IMPC)J -/-	-69.631	73.280	-0.27411	0.792	0.351
Drc7^em1(IMPC)J -/-	45.789	181.88	0.65573	0.905	0.804
Dusp18^em1(IMPC)J/Mmjax -/-	-121.21	99.982	-0.78577	0.792	0.349
Eef1b2^em1(IMPC)J/Mmjax -/-	-239.03	147.81	-1.8522	0.552	0.122
Egfem1^em1(IMPC)J -/-	24.091	87.990	0.46770	0.905	0.810
Fbxo10^em1(IMPC)J/Mmjax -/-	-221.67	128.52	-1.6646	0.552	0.0974
Fkbp6^{tm1b(KOMP)Wtsi} -/-	-84.991	65.566	-0.49019	0.657	0.203
Frmpd1^em1(IMPC)J -/-	-75.080	122.89	-0.33716	0.900	0.603
Gm20498^em1(IMPC)J/Mmjax -/-	24.705	77.016	0.49019	0.905	0.752
Gpr15^em1(IMPC)J -/-	96.784	114.23	0.96210	0.803	0.406
Gramd1c^{tm1b(KOMP)Wtsi} -/-	-53.100	93.217	-0.15097	0.897	0.574
Gramd3^em1(IMPC)J/Mmjax -/-	-6.3472	114.67	0.25335	0.972	0.957
Gsto1^em1(IMPC)J/Mmjax -/-	-107.06	156.36	-0.60678	0.869	0.500
Gtpbp10^{tm1b(KOMP)Mbp} -/-	-36.030	112.21	0.050154	0.905	0.751
Hipk4^{tm1b(KOMP)Mbp} -/-	-55.826	75.491	-0.19167	0.867	0.468
Hlcs^em1(IMPC)J/Mmjax -/+	-63.663	242.40	-0.23269	0.905	0.797
Igsf11^{tm1b(KOMP)Wtsi} -/-	80.061	41.048	0.84162	0.552	0.0701
Kcnc3^em1(IMPC)J -/-	-71.318	102.68	-0.29499	0.869	0.494
Kcnd3^em1(IMPC)J -/-	19.683	102.76	0.37993	0.917	0.850
Klhl22^em1(IMPC)J/Mmjax -/-	-122.58	105.86	-0.90023	0.695	0.260
Krt80^em1(IMPC)J -/-	-134.57	113.09	-1.0625	0.691	0.245
Kynu^em1(IMPC)J/Mmjax -/-	-171.06	116.56	-1.2591	0.695	0.280
Lpgat1^em1(IMPC)J/Mmjax -/-	35.62	128.50	0.55924	0.905	0.784
Lrp1^{tm1.1(KOMP)Wtsi} -/+	-13.901	142.33	0.21214	0.946	0.924
Mapk15^{tm1b(EUCOMM)Hmgu} -/-	-36.869	111.72	-0.010027	0.905	0.744
Mfsd4b4^em1(IMPC)J/Mmjax -/-	43.808	55.330	0.63106	0.828	0.441
Mgme1^em1(IMPC)J/Mmjax -/-	185.10	290.08	1.2591	0.875	0.538
Mlx^{tm1.1(KOMP)Vlcg} -/-	-118.18	67.048	-0.75875	0.552	0.0858
Mmaa^em1(IMPC)J/Mmjax -/-	239.31	167.56	1.5893	0.623	0.181
Nt5dc1^em1(IMPC)J -/-	-97.117	76.843	-0.55924	0.662	0.219
Nt5dc2^em1(IMPC)J/Mmjax -/-	-35.379	105.22	0.070243	0.905	0.739
Nup37^{tm1.1(KOMP)Vlcg}/2J -/-	-334.88	175.85	-2.4089	0.552	0.0730
Otogl^em1(IMPC)J -/-	327.71	129.54	2.1444	0.401	0.0184
Ovch2^{tm1b(KOMP)Mbp} -/-	-196.08	76.323	-1.4051	0.401	0.0141
Patj^em1(IMPC)J -/-	-281.29	184.03	-2.1444	0.576	0.146
Pcgf1^{tm1.1(KOMP)Vlcg} -/+	-30.038	72.217	0.090361	0.900	0.681
Phkb^em1(IMPC)J/Mmjax -/+	-122.40	187.23	-0.87055	0.871	0.520
Plod2^em1(IMPC)J/Mmjax -/+	216.72	143.28	1.5220	0.576	0.146
Polr1c^em1(IMPC)J/Mmjax -/+	-97.417	143.44	-0.58284	0.869	0.505
Prss2^{tm1.1(KOMP)Vlcg} -/-	-78.881	140.33	-0.40157	0.897	0.579
Ptprk^em1(IMPC)J/Mmjax -/-	46.143	106.67	0.68080	0.900	0.678
Pus1^em1(IMPC)J/Mmjax -/-	89.911	87.288	0.90023	0.742	0.311
Rab34^{tm1b(EUCOMM)Hmgu} -/+	-96.890	86.829	-0.53594	0.695	0.273
Rad21l^{tm1b(KOMP)Wtsi} -/-	-110.60	73.848	-0.68080	0.576	0.142
Rbpms2^em1(IMPC)J -/-	144.96	176.61	1.0625	0.810	0.425
Rec8^{tm1b(KOMP)Wtsi}/2J -/-	20.004	81.583	0.40157	0.905	0.808
Rgs22^{tm1b(KOMP)Wtsi} -/-	-39.297	81.255	-0.050154	0.900	0.632
Rimklb^{tm1.1(KOMP)Vlcg} -/-	-2.7446	84.322	0.27411	0.981	0.974
Rnf10^em1(IMPC)J -/-	-121.88	140.66	-0.84162	0.803	0.394
Rtl10^em1(IMPC)J/Mmjax -/-	-109.00	127.37	-0.65573	0.803	0.401
Rxylt1^em1(IMPC)J/Mmjax -/+	373.77	195.02	2.4089	0.552	0.0713
Sebox^em1(IMPC)J -/-	40.155	98.026	0.58284	0.900	0.686
Secisbp2l^em1(IMPC)J/Mmjax -/-	74.960	75.168	0.78577	0.762	0.326
Serpina1f^em1(IMPC)J -/-	-69.155	116.13	-0.25335	0.886	0.557
Setd6^{tm1.1(KOMP)Mbp}/3J -/-	-124.57	101.77	-0.93072	0.687	0.233
Sh3rf3^em1(IMPC)J/Mmjax -/-	-38.888	83.686	-0.030084	0.900	0.646
Slc41a2^em1(IMPC)J/Mmjax -/-	-160.48	88.080	-1.1359	0.552	0.0815
Slc9a9^em1(IMPC)J/Mmjax -/-	-196.81	120.25	-1.4611	0.552	0.113
Snx3^{tm1.1(KOMP)Vlcg} -/+	-23.592	83.796	0.15097	0.905	0.780
Sp5^{tm1b(KOMP)Wtsi} -/-	-118.04	136.89	-0.73228	0.803	0.397
Spag17^{tm1b(KOMP)Wtsi} -/-	25.037	111.21	0.51293	0.912	0.824
Spink12^em1(IMPC)J -/-	-25.445	62.950	0.11052	0.900	0.689
Sprr1a^em1(IMPC)J -/-	-75.612	91.893	-0.35846	0.810	0.420
Srbd1^em1(IMPC)J/Mmjax -/+	153.25	124.38	1.0985	0.687	0.238
St6galnac3^em1(IMPC)J -/-	-73.160	156.12	-0.31600	0.900	0.645
Stag3^{tm1e.1(KOMP)Wtsi}/2J -/-	-208.47	76.201	-1.5220	0.401	0.0107
Svep1^{tm1b(EUCOMM)Hmgu} -/+	22.787	59.143	0.42340	0.905	0.702
Syce1^{tm1b(KOMP)Wtsi}/2J -/-	11.618	74.588	0.31600	0.922	0.877
Taco1^em1(IMPC)J/Mmjax -/+	-258.42	122.67	-1.9774	0.552	0.0537
Taco1^em1(IMPC)J/Mmjax -/-	-57.091	83.090	-0.21214	0.869	0.496
Tat^em1(IMPC)J/Mmjax -/-	-77.123	90.294	-0.37993	0.803	0.401
Tbc1d5^em1(IMPC)J -/-	205.45	143.93	1.4051	0.601	0.170
Tctn3^em1(IMPC)J/Mmjax -/+	322.36	187.29	1.9774	0.552	0.0999
Tecpr2^em1(IMPC)J/Mmjax -/-	188.42	117.29	1.3047	0.552	0.125
Tex2^{tm1.1(KOMP)Vlcg}/2J -/-	-50.871	79.175	-0.13072	0.871	0.527
Thsd7a^{tm1b(KOMP)Mbp} -/-	-165.39	123.70	-1.1750	0.643	0.192
Tnnc1^em1(IMPC)J/Mmjax -/+	193.83	75.127	1.3532	0.401	0.0175
Tpgs2^{tm1.1(KOMP)Vlcg} -/-	-217.18	86.686	-1.5893	0.401	0.0194
Tpk1^em1(IMPC)J/Mmjax -/+	-121.32	71.552	-0.81338	0.552	0.118
Trip13^{tm1.1(KOMP)Vlcg} -/-	-125.14	53.844	-0.96210	0.468	0.0264
Tspan13^em1Llp -/-	-21.113	99.505	0.19167	0.915	0.834
Ttc38^em1Llp -/-	124.46	199.77	0.99446	0.875	0.543
Tuba8^em1(IMPC)J -/-	-149.00	102.95	-1.0985	0.591	0.162
Tubb2a^em1(IMPC)J -/-	3.5664	145.30	0.29499	0.981	0.981
Ubap2^em1(IMPC)J/Mmjax -/-	-111.18	66.372	-0.70630	0.552	0.104
Ubiad1^em1(IMPC)J/Mmjax -/+	213.83	105.24	1.4611	0.552	0.0591
Utp4^em1(IMPC)J/Mmjax -/+	292.39	174.09	1.8522	0.552	0.107
Wdr81^em1(IMPC)J -/+	261.46	79.902	1.6646	0.333	0.00269
Yeats2^em1(IMPC)J/Mmjax -/+	-81.739	94.532	-0.44544	0.803	0.397
Zc3h7a^em1(IMPC)J/Mmjax -/-	-84.486	78.160	-0.46770	0.699	0.288
Zfp174^em1(IMPC)J -/-	-226.46	98.933	-1.7507	0.483	0.0312
Zfp329^em1(IMPC)J -/-	-50.489	116.31	-0.11052	0.900	0.668
Zfp422^em1(IMPC)J -/-	-7.2494	64.086	0.23269	0.941	0.911
Zfp706^em1(IMPC)J/Mmjax -/+	-126.13	74.177	-1.0279	0.552	0.105
Zfp827^em1(IMPC)J/Mmjax -/-	-108.06	90.942	-0.63106	0.695	0.273

TRAIT CORRELATION PLOT

Correlate latency to enter dark zone, 20 min test with JaxKOMP-LAP trait: