MPD: JaxKOMP-LAP measure: total_hole_pokes_hole

JaxKOMP-LAP phenotype measure: total_hole_pokes_hole_12

MPD and LIMS short name	total_hole_pokes_hole_12 total_hole_pokes_hole_12
Phenotype description	number of hole pokes by individual hole number, 20 min test, 12 [n]
MPD and LIMS phenotype procedure	hole board test holeboard View protocol
MPD measure ID, data type	101463 numeric data
Number of genotypes	97 genotypes completed with analytics available, both sexes
Age at testing	67-73wks Late Adult Phenotyping study LAP

Ontology mappings

Data points below are the computed genotype effect size for each KOMP genotype vs. C57BL6/NJ controls.

MULTIPLE GENOTYPE PROFILE PLOT

Dimensions Width: × Height: px

Plot Options Alphabetical Order Standard Error Show Effect Sizes RankZ

Significance Threshold p-Value Threshold Adjusted Unadjusted

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Genotype	Genotype Effect	Genotype Effect SE	Genotype Effect RankZ	Adjusted p-value	Unadjusted p-value

Abcd3^em1(IMPC)J -/-	0.20900	0.51834	0.31192	0.943	0.691
Acadsb^em1(IMPC)J -/-	0.27679	0.53307	0.47800	0.943	0.608
Acy1^em1(IMPC)J -/-	0.25714	0.56684	0.39360	0.943	0.657
Adad2^em1(IMPC)J -/-	0.36666	0.60626	0.69063	0.941	0.551
Adamts14^em1(IMPC)J -/-	-0.25556	0.49671	-0.39360	0.943	0.697
Adamtsl4^em1(IMPC)J -/-	1.0824	0.39313	1.4652	0.153	0.0111
Afmid^em1Llp -/-	-0.87324	0.47608	-1.2700	0.574	0.0769
Alg8^em1(IMPC)J/Mmjax -/+	0.35942	0.48111	0.62707	0.941	0.592
Alg9^em1(IMPC)J/Mmjax -/+	0.59574	0.86079	0.98113	0.941	0.496
Anapc1^em1(IMPC)J/Mmjax -/+	0.023810	0.80722	-0.051178	0.995	0.977
Apmap^em1(IMPC)J/Mmjax -/-	0.072472	0.37574	0.025581	0.943	0.848
Arap3^em1(IMPC)J -/-	1.2500	0.44043	1.6350	0.153	0.00869
Brip1^em1(IMPC)J/Mmjax -/-	0.27778	0.95693	0.50687	0.943	0.776
C1qc^em1(IMPC)J -/-	-0.56757	0.63363	-0.75712	0.941	0.379
C7^em1(IMPC)J/Mmjax -/-	-0.85000	0.75586	-1.2147	0.941	0.463
Catsperz^{tm1.1(KOMP)Vlcg} -/-	0.23874	0.40586	0.36611	0.941	0.561
Ccdc28a^{tm3b(EUCOMM)Wtsi}/2J -/-	0.47498	0.44565	0.82713	0.941	0.293
Cdc42bpb^em1(IMPC)J -/+	-1.3363	0.69923	-1.6350	0.574	0.0675
Cep135^em1(IMPC)J -/+	0.28546	0.76163	0.53618	0.943	0.711
Cgref1^em1(IMPC)J/Mmjax -/-	-0.35000	0.45035	-0.50687	0.941	0.447
Clptm1l^em1(IMPC)J/Mmjax -/-	-0.6	0.88962	-0.82713	0.941	0.522
Cr2^em1Llp -/-	-0.98691	0.70723	-1.3295	0.732	0.173
Diaph3^{tm1b(KOMP)Mbp}/2J -/+	-0.45323	0.66490	-0.56595	0.941	0.501
Dnajb2^em1(IMPC)J -/-	0.46018	0.48559	0.79164	0.941	0.354
Dnase1l2^em1(IMPC)J -/-	0.61537	0.66723	1.0234	0.941	0.366
Drc7^em1(IMPC)J -/-	0.10638	0.46791	0.051178	0.943	0.822
Dusp18^em1(IMPC)J/Mmjax -/-	0.33073	0.43108	0.72348	0.941	0.499
Egfem1^em1(IMPC)J -/-	0.15758	0.56153	0.20607	0.943	0.805
Fbxo10^em1(IMPC)J/Mmjax -/-	-0.12736	0.56692	-0.25863	0.943	0.825
Fkbp6^{tm1b(KOMP)Wtsi} -/-	0.22680	0.86633	0.33889	0.943	0.796
Frmpd1^em1(IMPC)J -/-	-0.46479	0.50791	-0.59623	0.941	0.457
Gpr15^em1(IMPC)J -/-	-1.1190	0.77821	-1.5446	0.732	0.170
Gramd1c^{tm1b(KOMP)Wtsi} -/-	-1.0040	0.62800	-1.3942	0.732	0.124
Gramd3^em1(IMPC)J/Mmjax -/-	-0.069444	0.65235	-0.12824	0.967	0.917
Gsto1^em1(IMPC)J/Mmjax -/-	-1.6500	0.57017	-2.0454	0.153	0.00760
Gtpbp10^{tm1b(KOMP)Mbp} -/-	-0.50327	0.49554	-0.65852	0.941	0.320
Igsf11^{tm1b(KOMP)Wtsi} -/-	0.26820	0.41478	0.44951	0.941	0.529
Kcnc3^em1(IMPC)J -/-	0.44286	0.78427	0.75712	0.941	0.578
Kcnd3^em1(IMPC)J -/-	-0.11308	0.77731	-0.20607	0.955	0.886
Krt80^em1(IMPC)J -/-	0.25769	0.63048	0.42139	0.943	0.686
Kynu^em1(IMPC)J/Mmjax -/-	0.32951	0.39890	0.56595	0.941	0.469
Lrp1^{tm1.1(KOMP)Wtsi} -/+	1.0000	0.51970	1.2147	0.574	0.0712
Mapk15^{tm1b(EUCOMM)Hmgu} -/-	0.94118	0.78507	1.1628	0.904	0.242
Mfsd4b4^em1(IMPC)J/Mmjax -/-	0.36207	0.75418	0.65852	0.943	0.643
Mgme1^em1(IMPC)J/Mmjax -/-	-0.51220	0.64185	-0.69063	0.941	0.443
Mlx^{tm1.1(KOMP)Vlcg} -/-	-1.3801	0.93823	-1.7413	0.732	0.157
Mmaa^em1(IMPC)J/Mmjax -/-	-4.1623	1.0430	-2.3188	0.153	0.00256
Nars2^em1(IMPC)J -/+	1.0303	0.67681	1.3295	0.941	0.370
Nt5dc1^em1(IMPC)J -/-	-0.57742	0.66723	-0.79164	0.941	0.397
Nup37^{tm1.1(KOMP)Vlcg}/2J -/-	-0.62069	0.84512	-0.90145	0.941	0.472
Otogl^em1(IMPC)J -/-	-0.64955	0.45599	-0.94054	0.732	0.170
Ovch2^{tm1b(KOMP)Mbp} -/-	0.036440	0.48606	-0.025581	0.981	0.941
Patj^em1(IMPC)J -/-	-0.34063	0.71218	-0.47800	0.943	0.638
Pcgf1^{tm1.1(KOMP)Vlcg} -/+	0.58367	0.81870	0.94054	0.941	0.482
Plod2^em1(IMPC)J/Mmjax -/+	-0.33959	0.61311	-0.44951	0.941	0.586
Prss2^{tm1.1(KOMP)Vlcg} -/-	1.6000	0.78268	2.0454	0.496	0.0512
Pus1^em1(IMPC)J/Mmjax -/-	-0.25798	0.61717	-0.42139	0.943	0.678
Rab34^{tm1b(EUCOMM)Hmgu} -/+	-0.20837	0.90560	-0.33889	0.943	0.819
Rad21l^{tm1b(KOMP)Wtsi} -/-	-0.0030388	0.46677	-0.10249	0.995	0.995
Rbpms2^em1(IMPC)J -/-	1.0312	0.72164	1.3942	0.732	0.173
Rec8^{tm1b(KOMP)Wtsi}/2J -/-	0.86004	0.69249	1.1139	0.895	0.221
Rgs22^{tm1b(KOMP)Wtsi} -/-	1.2466	0.58375	1.5446	0.452	0.0419
Rimklb^{tm1.1(KOMP)Vlcg} -/-	1.7879	1.1844	2.3188	0.732	0.147
Rnf10^em1(IMPC)J -/-	-0.16228	0.54069	-0.31192	0.943	0.766
Rxylt1^em1(IMPC)J/Mmjax -/+	-0.61905	0.63513	-0.86370	0.941	0.342
Sebox^em1(IMPC)J -/-	-0.50000	0.75829	-0.62707	0.941	0.517
Secisbp2l^em1(IMPC)J/Mmjax -/-	1.0213	0.61956	1.2700	0.732	0.109
Serpina1f^em1(IMPC)J -/-	-0.82226	0.67666	-1.1628	0.904	0.236
Sh3rf3^em1(IMPC)J/Mmjax -/-	-0.68877	0.48008	-0.98113	0.732	0.162
Slc41a2^em1(IMPC)J/Mmjax -/-	0.0044543	0.73768	-0.076809	0.995	0.995
Snx3^{tm1.1(KOMP)Vlcg} -/+	0.13704	0.50970	0.15407	0.943	0.790
Sp5^{tm1b(KOMP)Wtsi} -/-	0.12009	0.55241	0.12824	0.943	0.830
Spink12^em1(IMPC)J -/-	-0.75000	0.67543	-1.0676	0.941	0.277
Sprr1a^em1(IMPC)J -/-	0.73077	0.63421	1.0676	0.941	0.263
St6galnac3^em1(IMPC)J -/-	-1.0779	0.41409	-1.4652	0.212	0.0175
Stag3^{tm1e.1(KOMP)Wtsi}/2J -/-	-0.10560	0.57768	-0.15407	0.943	0.856
Svep1^{tm1b(EUCOMM)Hmgu} -/+	0.053311	1.1704	0.0	0.995	0.964
Syce1^{tm1b(KOMP)Wtsi}/2J -/-	-0.39902	0.45173	-0.53618	0.941	0.382
Taco1^em1(IMPC)J/Mmjax -/-	-0.78491	0.52649	-1.1139	0.732	0.143
Tbc1d5^em1(IMPC)J -/-	0.11163	0.51956	0.076809	0.943	0.832
Tctn3^em1(IMPC)J/Mmjax -/+	-0.15034	0.85793	-0.28517	0.950	0.872
Tecpr2^em1(IMPC)J/Mmjax -/-	0.48977	0.52810	0.86370	0.941	0.365
Tex2^{tm1.1(KOMP)Vlcg}/2J -/-	1.4329	0.46982	1.7413	0.153	0.00568
Thsd7a^{tm1b(KOMP)Mbp} -/-	1.5626	0.56351	1.8719	0.153	0.00995
Tpgs2^{tm1.1(KOMP)Vlcg} -/-	-0.70870	1.1500	-1.0234	0.941	0.549
Trip13^{tm1.1(KOMP)Vlcg} -/-	-0.11163	0.59859	-0.18001	0.943	0.855
Tspan13^em1Llp -/-	0.16848	0.71602	0.25863	0.943	0.816
Ttc38^em1Llp -/-	0.15315	1.2434	0.18001	0.963	0.903
Ubiad1^em1(IMPC)J/Mmjax -/+	-0.53333	0.50254	-0.72348	0.941	0.303
Wdr81^em1(IMPC)J -/+	-0.24000	0.41613	-0.36611	0.941	0.570
Yeats2^em1(IMPC)J/Mmjax -/+	0.33657	0.60239	0.59623	0.941	0.583
Zc3h7a^em1(IMPC)J/Mmjax -/-	-1.4127	0.52739	-1.8719	0.153	0.0110
Zfp174^em1(IMPC)J -/-	0.18440	0.56523	0.28517	0.943	0.747
Zfp329^em1(IMPC)J -/-	0.11263	0.55904	0.10249	0.943	0.842
Zfp422^em1(IMPC)J -/-	-0.11923	0.61014	-0.23227	0.943	0.847
Zfp706^em1(IMPC)J/Mmjax -/+	0.16260	0.80484	0.23227	0.943	0.844
Zfp827^em1(IMPC)J/Mmjax -/-	0.52174	0.92140	0.90145	0.941	0.585

TRAIT CORRELATION PLOT

Correlate number of hole pokes by individual hole number, 20 min test with JaxKOMP-LAP trait: