MPD: JaxKOMP-LAP measure: corners

JaxKOMP-LAP phenotype measure: corners_permanence

MPD and LIMS short name	corners_permanence corners_permanence_time
Phenotype description	permanence time in corners of arena, 20 min test [s]
MPD and LIMS phenotype procedure	open field test open field View protocol
MPD measure ID, data type	101237 numeric data
Number of genotypes	118 genotypes completed with analytics available, both sexes
Age at testing	66-72wks Late Adult Phenotyping study LAP

Ontology mappings

Data points below are the computed genotype effect size for each KOMP genotype vs. C57BL6/NJ controls.

MULTIPLE GENOTYPE PROFILE PLOT

Dimensions Width: × Height: px

Plot Options Alphabetical Order Standard Error Show Effect Sizes RankZ

Significance Threshold p-Value Threshold Adjusted Unadjusted

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Genotype	Genotype Effect	Genotype Effect SE	Genotype Effect RankZ	Adjusted p-value	Unadjusted p-value

Abcd3^em1(IMPC)J -/-	30.279	75.436	0.44619	0.907	0.692
Abhd17b^em1(IMPC)J -/-	183.05	70.082	1.5647	0.169	0.0159
Acadsb^em1(IMPC)J -/-	110.12	76.006	1.0310	0.507	0.159
Acy1^em1(IMPC)J -/-	-87.486	86.582	-0.92890	0.633	0.322
Adad2^em1(IMPC)J -/-	-74.869	41.877	-0.74913	0.396	0.0820
Adamts14^em1(IMPC)J -/-	-38.041	82.633	-0.35487	0.907	0.725
Adamtsl4^em1(IMPC)J -/-	15.028	52.770	0.33252	0.907	0.778
Afmid^em1Llp -/-	-50.582	65.023	-0.54140	0.714	0.443
Agbl1^em1(IMPC)J/Mmjax -/-	-8.8700	106.98	0.13735	0.959	0.935
Alg8^em1(IMPC)J/Mmjax -/+	37.508	89.084	0.51716	0.907	0.715
Alg9^em1(IMPC)J/Mmjax -/+	-63.755	113.98	-0.64179	0.856	0.583
Anapc1^em1(IMPC)J/Mmjax -/+	-110.99	80.096	-1.2306	0.507	0.182
Apmap^em1(IMPC)J/Mmjax -/-	109.14	72.975	0.99584	0.491	0.146
AU040320^em1(IMPC)J -/-	86.443	79.900	0.77731	0.633	0.290
Brip1^em1(IMPC)J/Mmjax -/-	-22.744	81.651	-0.13735	0.907	0.783
C1qc^em1(IMPC)J -/-	125.11	76.158	1.2306	0.428	0.112
C7^em1(IMPC)J/Mmjax -/-	11.082	71.759	0.26642	0.918	0.879
Catsperz^{tm1.1(KOMP)Vlcg} -/-	-106.98	60.753	-1.1453	0.403	0.0888
Ccdc28a^{tm3b(EUCOMM)Wtsi}/2J -/-	-118.48	37.936	-1.4968	0.0629	0.00320
Cdc42bpb^em1(IMPC)J -/+	-77.912	77.452	-0.80613	0.633	0.325
Cep135^em1(IMPC)J -/+	-306.95	57.891	-2.3909	0.00480	0.0000407
Cgref1^em1(IMPC)J/Mmjax -/-	-31.359	72.290	-0.24466	0.907	0.668
Chmp7^em1(IMPC)J/Mmjax -/+	128.55	170.02	1.2768	0.856	0.588
Cldn13^em1(IMPC)J -/-	135.67	45.453	1.3259	0.0977	0.00662
Clptm1l^em1(IMPC)J/Mmjax -/-	205.80	110.48	1.6408	0.393	0.0765
Cr2^em1Llp -/-	-41.232	53.391	-0.40011	0.714	0.446
Diaph3^{tm1b(KOMP)Mbp}/2J -/+	-102.42	53.441	-1.0676	0.368	0.0656
Dnajb2^em1(IMPC)J -/-	-205.02	86.838	-2.1247	0.200	0.0271
Dnase1l2^em1(IMPC)J -/-	13.714	49.871	0.31034	0.907	0.786
Drc7^em1(IMPC)J -/-	-27.800	80.334	-0.20146	0.907	0.733
Dusp18^em1(IMPC)J/Mmjax -/-	-42.959	93.062	-0.42304	0.907	0.649
Eef1b2^em1(IMPC)J/Mmjax -/-	29.799	112.66	0.42304	0.907	0.794
Egfem1^em1(IMPC)J -/-	26.761	70.244	0.37739	0.907	0.740
Fbxo10^em1(IMPC)J/Mmjax -/-	-67.033	68.552	-0.66789	0.633	0.338
Fkbp6^{tm1b(KOMP)Wtsi} -/-	-103.58	45.032	-1.1056	0.200	0.0272
Frmpd1^em1(IMPC)J -/-	-126.32	77.279	-1.5647	0.612	0.244
Gm20498^em1(IMPC)J/Mmjax -/-	36.886	50.213	0.49323	0.714	0.468
Gpr15^em1(IMPC)J -/-	45.016	88.412	0.56595	0.887	0.617
Gramd1c^{tm1b(KOMP)Wtsi} -/-	95.057	68.638	0.83563	0.507	0.178
Gramd3^em1(IMPC)J/Mmjax -/-	42.821	121.78	0.54140	0.907	0.759
Gtpbp10^{tm1b(KOMP)Mbp} -/-	52.369	58.374	0.64179	0.699	0.379
Igsf11^{tm1b(KOMP)Wtsi} -/-	256.80	76.904	1.9564	0.0977	0.00590
Kcnc3^em1(IMPC)J -/-	47.605	47.298	0.61612	0.633	0.325
Kcnd3^em1(IMPC)J -/-	-16.742	89.422	0.073791	0.910	0.853
Klhl22^em1(IMPC)J/Mmjax -/-	53.588	52.114	0.66789	0.633	0.314
Krt80^em1(IMPC)J -/-	-83.740	48.068	-0.83563	0.408	0.0933
Kynu^em1(IMPC)J/Mmjax -/-	-84.392	78.995	-0.86588	0.633	0.298
Lpgat1^em1(IMPC)J/Mmjax -/-	-127.33	91.578	-1.6408	0.507	0.176
Lrp1^{tm1.1(KOMP)Wtsi} -/+	-36.364	60.883	-0.33252	0.834	0.559
Mapk15^{tm1b(EUCOMM)Hmgu} -/-	-20.680	27.564	-0.052685	0.714	0.460
Mlx^{tm1.1(KOMP)Vlcg} -/-	-27.409	36.630	-0.18001	0.714	0.459
Mmaa^em1(IMPC)J/Mmjax -/-	119.73	118.36	1.1056	0.708	0.418
Nars2^em1(IMPC)J -/+	1.2289	62.101	0.20146	0.996	0.987
Nt5dc1^em1(IMPC)J -/-	16.100	65.948	0.35487	0.907	0.809
Nt5dc2^em1(IMPC)J/Mmjax -/-	172.92	68.655	1.4968	0.169	0.0185
Nup37^{tm1.1(KOMP)Vlcg}/2J -/-	267.38	131.25	2.3909	0.350	0.0566
Otogl^em1(IMPC)J -/-	-20.556	106.22	-0.031601	0.910	0.848
Ovch2^{tm1b(KOMP)Mbp} -/-	-49.837	43.578	-0.49323	0.618	0.259
Patj^em1(IMPC)J -/-	-193.48	85.295	-1.9564	0.249	0.0358
Pcgf1^{tm1.1(KOMP)Vlcg} -/+	-48.564	37.359	-0.46958	0.549	0.205
Phkb^em1(IMPC)J/Mmjax -/+	-88.467	106.63	-0.96183	0.708	0.416
Plod2^em1(IMPC)J/Mmjax -/+	122.59	106.34	1.1868	0.618	0.262
Polr1c^em1(IMPC)J/Mmjax -/+	-54.447	74.221	-0.59085	0.714	0.472
Prss2^{tm1.1(KOMP)Vlcg} -/-	-33.681	86.736	-0.26642	0.907	0.702
Ptprk^em1(IMPC)J/Mmjax -/-	112.03	42.639	1.0676	0.169	0.0171
Pus1^em1(IMPC)J/Mmjax -/-	263.42	60.093	2.1247	0.00505	0.0000856
Rab34^{tm1b(EUCOMM)Hmgu} -/+	-2.5147	38.561	0.15864	0.965	0.948
Rad21l^{tm1b(KOMP)Wtsi} -/-	-112.71	41.301	-1.2768	0.118	0.00897
Rbpms2^em1(IMPC)J -/-	106.30	99.066	0.96183	0.633	0.300
Rec8^{tm1b(KOMP)Wtsi}/2J -/-	-10.532	48.701	0.094931	0.910	0.830
Rgs22^{tm1b(KOMP)Wtsi} -/-	76.572	46.346	0.72152	0.425	0.108
Rimklb^{tm1.1(KOMP)Vlcg} -/-	-46.153	34.100	-0.44619	0.507	0.185
Rnf10^em1(IMPC)J -/-	-21.199	61.235	-0.073791	0.907	0.732
Rtl10^em1(IMPC)J/Mmjax -/-	-116.11	56.240	-1.4351	0.327	0.0499
Rxylt1^em1(IMPC)J/Mmjax -/+	95.355	84.040	0.86588	0.626	0.271
Sebox^em1(IMPC)J -/-	-17.531	74.168	0.031601	0.907	0.815
Secisbp2l^em1(IMPC)J/Mmjax -/-	-73.067	39.197	-0.72152	0.391	0.0728
Sel1l3^em1(IMPC)J/Mmjax -/-	219.93	125.88	1.7277	0.633	0.331
Serpina1f^em1(IMPC)J -/-	103.80	73.339	0.92890	0.507	0.172
Setd6^{tm1.1(KOMP)Mbp}/3J -/-	-72.267	51.080	-0.69446	0.507	0.167
Sh3rf3^em1(IMPC)J/Mmjax -/-	77.544	47.960	0.74913	0.436	0.121
Slc41a2^em1(IMPC)J/Mmjax -/-	-35.695	44.119	-0.31034	0.708	0.426
Slc9a9^em1(IMPC)J/Mmjax -/-	11.195	68.253	0.28831	0.918	0.871
Snx3^{tm1.1(KOMP)Vlcg} -/+	-56.265	47.065	-0.61612	0.612	0.240
Sp5^{tm1b(KOMP)Wtsi} -/-	46.527	55.335	0.59085	0.708	0.409
Spag17^{tm1b(KOMP)Wtsi} -/-	-192.37	56.297	-1.8302	0.0617	0.00209
Spink12^em1(IMPC)J -/-	-0.20500	46.005	0.18001	0.996	0.996
Sprr1a^em1(IMPC)J -/-	-38.704	45.781	-0.37739	0.708	0.407
Srbd1^em1(IMPC)J/Mmjax -/+	121.59	71.147	1.1453	0.425	0.106
Stag3^{tm1e.1(KOMP)Wtsi}/2J -/-	-18.684	53.684	-0.010532	0.907	0.730
Svep1^{tm1b(EUCOMM)Hmgu} -/+	-9.2851	50.730	0.11611	0.910	0.856
Syce1^{tm1b(KOMP)Wtsi}/2J -/-	10.789	51.349	0.24466	0.910	0.835
Taco1^em1(IMPC)J/Mmjax -/+	-114.79	65.970	-1.3784	0.425	0.104
Taco1^em1(IMPC)J/Mmjax -/-	-31.319	42.329	-0.22301	0.714	0.465
Tat^em1(IMPC)J/Mmjax -/-	28.891	58.323	0.40011	0.888	0.625
Tbc1d5^em1(IMPC)J -/-	102.78	96.832	0.89695	0.633	0.303
Tctn3^em1(IMPC)J/Mmjax -/+	-50.410	43.369	-0.51716	0.618	0.261
Tecpr2^em1(IMPC)J/Mmjax -/-	-101.21	42.098	-1.0310	0.200	0.0266
Tex2^{tm1.1(KOMP)Vlcg}/2J -/-	8.8711	78.905	0.22301	0.943	0.911
Thsd7a^{tm1b(KOMP)Mbp} -/-	-52.379	42.074	-0.56595	0.586	0.223
Tnnc1^em1(IMPC)J/Mmjax -/+	-113.60	74.316	-1.3259	0.488	0.141
Tpgs2^{tm1.1(KOMP)Vlcg} -/-	239.51	70.994	1.8302	0.0619	0.00219
Tpk1^em1(IMPC)J/Mmjax -/+	155.62	78.274	1.4351	0.350	0.0594
Trip13^{tm1.1(KOMP)Vlcg} -/-	151.10	44.055	1.3784	0.0617	0.00160
Tspan13^em1Llp -/-	-34.263	42.307	-0.28831	0.708	0.425
Ttc38^em1Llp -/-	-17.060	60.445	0.052685	0.907	0.782
Tuba8^em1(IMPC)J -/-	-17.678	69.506	0.010532	0.907	0.802
Tubb2a^em1(IMPC)J -/-	-76.339	77.893	-0.77731	0.633	0.338
Ubap2^em1(IMPC)J/Mmjax -/-	-100.39	56.384	-0.99584	0.396	0.0839
Utp4^em1(IMPC)J/Mmjax -/+	65.831	79.114	0.69446	0.708	0.415
Wdr81^em1(IMPC)J -/+	-21.243	68.514	-0.094931	0.907	0.759
Yeats2^em1(IMPC)J/Mmjax -/+	-108.69	71.616	-1.1868	0.507	0.155
Zc3h7a^em1(IMPC)J/Mmjax -/-	-21.589	60.079	-0.11611	0.907	0.721
Zfp174^em1(IMPC)J -/-	-25.635	70.266	-0.15864	0.907	0.718
Zfp329^em1(IMPC)J -/-	33.122	87.321	0.46958	0.907	0.708
Zfp422^em1(IMPC)J -/-	94.579	59.508	0.80613	0.436	0.122
Zfp706^em1(IMPC)J/Mmjax -/+	-178.47	69.349	-1.7277	0.169	0.0186
Zfp827^em1(IMPC)J/Mmjax -/-	-85.996	78.404	-0.89695	0.633	0.301

TRAIT CORRELATION PLOT

Correlate permanence time in corners of arena, 20 min test with JaxKOMP-LAP trait: