MPD: JaxKOMP-EAP genotype: Anapc1<sup>em1(IMPC)J</sup>/Mmjax -/+

JaxKOMP-EAP effect sizes: Anapc1^em1(IMPC)J/Mmjax -/+ Gene Anapc1

MULTIPLE (NUMERIC) TRAIT PROFILE PLOT — Early Adult Phenotyping study (EAP)

In this plot, data points are the computed genotype effect size vs. C57BL/6NJ controls, for all measured numeric phenotypes in JaxKOMP-EAP

Dimensions Width: × Height: px

Plot Options Group by Procedure Standard Error Show Effect Sizes RankZ

Significance Threshold p-Value Threshold Adjusted Unadjusted

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Procedure	JaxKOMP-EAP Trait	Trait Effect	Trait Effect SE	Trait Effect RankZ	Adjusted p-value	Unadjusted p-value

ABR test	auditory brainstem response (ABR) threshold, sound pressure level, 6 kHz pip	1.3644	1.4585	0.14893	0.758	0.361
ABR test	auditory brainstem response (ABR) threshold, sound pressure level, 12 kHz pip	1.8750	2.0503	0.44894	0.790	0.372
ABR test	auditory brainstem response (ABR) threshold, sound pressure level, 18 kHz pip	1.8750	1.7359	0.23579	0.648	0.294
ABR test	auditory brainstem response (ABR) threshold, sound pressure level, 24 kHz pip	3.7500	3.4151	0.49603	0.669	0.286
ABR test	auditory brainstem response (ABR) threshold, sound pressure level, 30 kHz pip	-3.7500	4.4696	-0.61579	0.735	0.412
body composition	body length	-0.019675	0.047263	-0.044653	0.852	0.679
body composition	body weight (at time of DXA)	-0.27067	0.73295	-0.12518	0.852	0.714
body composition	bone area, whole body scan, head excluded	-0.016473	0.15738	0.098458	0.971	0.917
body composition	bone mineral content of whole body scan, head excluded	-0.0031083	0.011421	-0.040969	0.914	0.787
body composition	bone mineral content to body weight ratio	-0.000015694	0.00049230	0.13144	0.989	0.975
body composition	bone mineral density of whole body scan, head excluded	-0.00026355	0.00058751	-0.24912	0.835	0.656
body composition	fat tissue mass of whole body scan, head excluded	-0.22060	0.43131	-0.39357	0.803	0.612
body composition	fat tissue mass to body weight ratio	-0.0049923	0.014840	-0.16596	0.875	0.738
body composition	lean tissue mass of whole body scan, head excluded	0.42900	0.42431	0.73577	0.614	0.318
body composition	lean tissue mass to body weight ratio	0.022202	0.011763	1.0924	0.243	0.0662
body composition	percent fat, whole body scan, head excluded	-0.80750	1.4083	-0.35113	0.767	0.570
body composition	ratio of soft-tissue attenuation coefficients	0.0010310	0.0015825	0.40782	0.731	0.518
body composition	tissue area	-0.18048	0.28711	-0.41628	0.802	0.533
body composition	total tissue mass, whole body scan, head excluded	0.22955	0.47209	0.29360	0.804	0.629
clinical blood chemistry	alanine transaminase (plasma ALT)	1.3333	5.0681	0.12145	0.940	0.794
clinical blood chemistry	albumin (plasma Alb)	0.17308	0.33816	0.30554	0.849	0.613
clinical blood chemistry	alkaline phosphatase (plasma ALP)	11.806	2.6266	1.3415	0.00442	0.000128
clinical blood chemistry	aspartate transaminase (plasma AST)	4.7048	24.118	0.22883	0.957	0.847
clinical blood chemistry	aspartate transaminase to alanine transaminase ratio (plasma AST:ALT)	0.12106	0.43985	0.41779	0.932	0.785
clinical blood chemistry	blood urea nitrogen (BUN)	-3.3538	1.4301	-1.3010	0.146	0.0269
clinical blood chemistry	calcium (plasma Ca)	-0.021553	0.064603	0.19676	0.866	0.741
clinical blood chemistry	creatinine (plasma)	-0.016685	0.015522	-0.29109	0.542	0.293
clinical blood chemistry	glucose (plasma GLU, no fast)	17.199	11.399	0.95947	0.324	0.143
clinical blood chemistry	HDL cholesterol (plasma HDL)	3.0682	2.7138	0.41163	0.571	0.268
clinical blood chemistry	HDL cholesterol to total cholesterol ratio	0.0024738	0.0088668	0.0035585	0.936	0.782
clinical blood chemistry	phosphorus (plasma phosphate)	-0.11087	0.25819	-0.22490	0.845	0.671
clinical blood chemistry	total bilirubin (plasma TBIL)	-0.0096071	0.010669	-0.71698	0.716	0.376
clinical blood chemistry	total cholesterol (plasma CHOL, no fast)	4.0120	3.4350	0.46478	0.571	0.253
clinical blood chemistry	total protein (plasma TP)	0.63307	0.52540	0.42031	0.518	0.239
clinical blood chemistry	triglyceride (plasma TG, no fast)	-12.538	9.0174	-0.46872	0.454	0.176
EKG	duration of PQ interval	0.52801	0.83739	0.69744	0.910	0.532
EKG	duration of PR interval	0.80667	0.96216	0.95569	0.883	0.407
EKG	duration of QRS interval	0.45357	0.37796	1.1842	0.885	0.237
EKG	duration of QT interval	1.0281	0.93985	1.1484	0.761	0.281
EKG	duration of QTC interval, calculated by dividing QT interval by square root of preceding RR interval	0.68231	0.82222	0.79598	0.890	0.412
EKG	duration of RR interval	2.3583	1.9117	1.3971	0.647	0.225
EKG	duration of ST interval	0.57462	0.86016	0.79875	0.869	0.508
EKG	heart rate coefficient of variation (signal intensity)	0.96824	1.3575	0.88491	0.878	0.480
EKG	heart rate variability, mean of differences between sequential beats; beats per min	6.0557	9.9717	0.76052	0.917	0.547
EKG	heart rate, beats per min	-15.459	14.025	-1.2514	0.689	0.277
EKG	mean R amplitude, mean amplitude of signal measured from isoelectric line to peak of QRS	-0.27493	0.093840	-2.1422	0.136	0.00564
EKG	mean SR amplitude, mean amplitude of signal measured from signal minimum line to peak of QRS	-0.30563	0.11996	-1.7670	0.190	0.0149
EKG	number of signals	0.25187	3.8803	0.0080600	0.993	0.949
EKG	proportion of number pairs of successive beat-to-beat intervals that exceed 50 ms	6.6525	4.2188	1.3012	0.791	0.123
EKG	QT dispersion, measured as inter-lead variability of QT intervals	-0.97086	4.0169	-0.26293	0.977	0.810
EKG	QTc dispersion, calculated as rate-corrected QT dispersion	-1.6909	4.4750	-0.44329	0.959	0.708
EKG	root mean square of successive differences of neighboring RR intervals	1.4352	2.6137	0.86423	0.918	0.586
glucose tolerance test	amount glucose injected	-4.6707	1.9934	-0.95397	0.228	0.0242
glucose tolerance test	plasma glucose, 0min	2.4770	3.7671	0.019220	0.720	0.515
glucose tolerance test	plasma glucose, 15min	-15.928	17.570	-0.32985	0.693	0.370
glucose tolerance test	plasma glucose, 30min	-27.432	18.441	-0.72624	0.469	0.145
glucose tolerance test	plasma glucose, 60min	-5.8316	11.314	-0.13632	0.841	0.609
glucose tolerance test	plasma glucose, 120min	3.1833	6.4091	0.092104	0.841	0.622
grip strength	body weight (at time of grip strength test)	0.54175	0.47241	0.72263	0.457	0.264
grip strength	forelimb and hindlimb grip strength (mean of trials), average	12.146	6.7151	1.1329	0.233	0.0855
grip strength	forelimb and hindlimb grip strength (mean of trials), average normalized to bw	0.53985	0.28308	0.99009	0.209	0.0703
grip strength	forelimb and hindlimb grip strength by trial, trial1	13.814	10.864	1.1870	0.507	0.218
grip strength	forelimb and hindlimb grip strength by trial, trial2	22.351	9.8677	1.6244	0.165	0.0342
grip strength	forelimb and hindlimb grip strength by trial, trial3	1.8501	10.521	0.32361	0.942	0.862
grip strength	forelimb grip strength (mean of trials), average	17.035	6.1067	2.3547	0.0813	0.0113
grip strength	forelimb grip strength (mean of trials), average normalized to bw	0.77884	0.29509	1.9715	0.102	0.0153
grip strength	forelimb grip strength by trial, trial1	13.577	7.6877	1.6813	0.358	0.0926
grip strength	forelimb grip strength by trial, trial2	22.576	5.9756	2.5245	0.0312	0.00110
grip strength	forelimb grip strength by trial, trial3	13.493	6.6714	1.6031	0.273	0.0567
heart weight	heart weight, normalized to body weight	0.20590	0.11467	0.27714	0.233	0.0803
heart weight	heart weight, weight	6.4313	3.3543	0.47616	0.211	0.0625
hematology	basophil differential (percent of total WBC)	-0.074515	0.046279	-1.0315	0.549	0.119
hematology	calculated hemoglobin (cHGB)	0.23109	0.23017	0.43582	0.602	0.324
hematology	eosinophil differential (percent of total WBC)	-0.080128	0.19893	-0.16276	0.902	0.690
hematology	hematocrit (HCT)	1.5071	0.74026	1.2704	0.270	0.0517
hematology	hemoglobin concentration distribution width (HDW)	-0.040474	0.026020	-1.1020	0.406	0.132
hematology	large unstained cells (percent of total WBC)	0.16710	0.040224	1.0619	0.0230	0.000312
hematology	lymphocyte differential (percent of total WBC)	2.5790	1.8453	0.87280	0.427	0.174
hematology	mean corpuscular hemoglobin (CHr)	-0.033333	0.075715	-0.25935	0.835	0.663
hematology	mean platelet volume (MPV)	0.12692	0.11671	0.62659	0.512	0.286
hematology	mean RBC corpuscular hemoglobin (MCH)	0.070865	0.12236	0.24365	0.814	0.567
hematology	mean RBC corpuscular hemoglobin concentration (MCHC)	0.0071304	0.17496	0.038362	0.989	0.968
hematology	mean RBC corpuscular volume (MCV)	0.22044	0.35255	0.41777	0.742	0.537
hematology	measured hemoglobin (mHGB)	0.23910	0.25560	0.38613	0.647	0.358
hematology	monocyte differential (percent of total WBC)	-0.30261	0.12959	-0.76207	0.253	0.0272
hematology	neutrophil differential (percent of total WBC)	-2.2435	1.7719	-0.92396	0.467	0.216
hematology	platelet count (PLT; units per volume x 10³)	72.126	66.228	0.97766	0.646	0.286
hematology	RBC corpuscular distribution width (RDW)	-0.46218	0.39656	-1.5582	0.521	0.254
hematology	RBC corpuscular hemoglobin concentration mean (CHCM)	-0.18628	0.15434	-0.54650	0.495	0.238
hematology	red blood cell count (RBC; per volume x 10⁶)	0.13675	0.15850	0.28427	0.655	0.396
hematology	reticulocyte count (Retic; units per volume x 10⁹)	-14.919	18.522	-0.56020	0.766	0.428
hematology	reticulocyte differential (percent of total RBC)	-0.22878	0.22649	-0.77724	0.679	0.321
hematology	white blood cell count (WBC; units per volume x 10³)	0.28791	0.66887	0.37342	0.813	0.670
holeboard	number of hole pokes by individual hole number, 20 min test, 1	-0.51333	0.69877	-0.44001	0.819	0.467
holeboard	number of hole pokes by individual hole number, 20 min test, 2	-0.28272	0.35056	-0.32375	0.833	0.425
holeboard	number of hole pokes by individual hole number, 20 min test, 3	-0.60281	0.48116	-0.94213	0.733	0.218
holeboard	number of hole pokes by individual hole number, 20 min test, 4	-0.42384	0.48938	-0.34696	0.795	0.392
holeboard	number of hole pokes by individual hole number, 20 min test, 5	-0.59375	0.55022	-0.85128	0.769	0.288
holeboard	number of hole pokes by individual hole number, 20 min test, 6	0.086397	0.28869	0.27501	0.968	0.766
holeboard	number of hole pokes by individual hole number, 20 min test, 7	0.18566	0.32567	0.50108	0.936	0.572
holeboard	number of hole pokes by individual hole number, 20 min test, 8	-0.85846	0.54124	-1.2990	0.666	0.121
holeboard	number of hole pokes by individual hole number, 20 min test, 9	-0.38151	0.29532	-0.59594	0.671	0.204
holeboard	number of hole pokes by individual hole number, 20 min test, 10	0.31793	0.24599	0.87437	0.752	0.204
holeboard	number of hole pokes by individual hole number, 20 min test, 11	-0.21016	0.23393	-0.55016	0.839	0.375
holeboard	number of hole pokes by individual hole number, 20 min test, 12	-0.36029	0.46726	-0.52983	0.825	0.446
holeboard	number of hole pokes by individual hole number, 20 min test, 13	-1.0767	0.60630	-0.96922	0.472	0.0840
holeboard	number of hole pokes by individual hole number, 20 min test, 14	-0.41812	0.46321	-0.59705	0.764	0.373
holeboard	number of hole pokes by individual hole number, 20 min test, 15	-0.55882	0.41763	-0.79263	0.658	0.189
holeboard	number of hole pokes by individual hole number, 20 min test, 16	0.29596	0.95220	0.29962	0.933	0.758
holeboard	total number of hole pokes, 20 min test	-4.9117	3.5855	-0.60716	0.458	0.179
light / dark	fecal boli count, 20 min test	0.41650	0.76351	0.51697	0.859	0.589
light / dark	latency to enter dark zone, 20 min test	-42.590	68.967	-0.90253	0.852	0.540
light / dark	number of transitions between light and dark zones, 20 min test	11.018	7.7789	1.1138	0.483	0.164
light / dark	percentage of total time in dark zone, 20 min test	2.3082	5.3354	0.53873	0.884	0.668
light / dark	percentage of total time in light zone, 20 min test	-2.3082	5.3354	-0.54186	0.884	0.668
light / dark	time mobile in dark zone, 20 min test	14.356	13.141	0.72545	0.580	0.281
light / dark	time mobile in light zone, 20 min test	15.099	11.107	0.63677	0.432	0.182
light / dark	time spent in dark zone, 20 min test	34.401	68.629	0.75030	0.880	0.619
light / dark	time spent in light zone, 20 min test	-34.401	68.629	-0.75030	0.880	0.619
open field	average speed in center of arena, 20 min test	0.18004	0.37296	0.22819	0.850	0.632
open field	average speed in periphery of arena, 20 min test	0.35122	0.13472	0.80655	0.0680	0.0129
open field	distance traveled habituation ratio, 20 min test	2.0817	8.3773	0.21581	0.924	0.805
open field	distance traveled in center of arena, 20 min test	186.24	82.463	0.80841	0.142	0.0296
open field	distance traveled in periphery of arena, 20 min test	252.58	123.89	0.54158	0.188	0.0483
open field	distance traveled slope, 20 min test	-0.39234	7.8305	0.012755	0.992	0.960
open field	distance traveled, 20 min test, 1st 5min	73.937	70.981	0.24061	0.548	0.304
open field	distance traveled, 20 min test, 2nd 5min	162.55	42.269	1.2051	0.00709	0.000433
open field	distance traveled, 20 min test, 3rd 5min	110.46	46.848	0.73605	0.116	0.0236
open field	distance traveled, 20 min test, 4th 5min	93.810	47.797	0.55406	0.213	0.0568
open field	number of clockwise revolution episodes, 20 min test	1.9768	1.2330	0.75158	0.442	0.117
open field	number of counter-clockwise revolution episodes, 20 min test	2.7293	1.1365	1.0049	0.165	0.0212
open field	number of fecal boli, 20 min test	-0.70277	0.95568	-0.27962	0.747	0.467
open field	number of rears in 5 min bins, 20 min test, 1st 5min	3.2300	2.0523	0.69401	0.359	0.124
open field	number of rears in 5 min bins, 20 min test, 2nd 5min	2.9651	2.6104	0.41800	0.556	0.263
open field	number of rears in 5 min bins, 20 min test, 3rd 5min	2.2319	3.0071	0.21306	0.712	0.462
open field	number of rears in 5 min bins, 20 min test, 4th 5min	3.9472	3.2438	0.51994	0.504	0.231
open field	percentage of total time in center of arena, 20 min test	3.6734	3.1409	0.64735	0.567	0.249
open field	percentage of total time in center of arena, slope, 20 min test	-1.1099	1.4147	-0.48038	0.835	0.438
open field	percentage of total time in center, habituation ratio, 20 min test	-0.93072	1.4333	-0.36293	0.859	0.520
open field	percentage of total time in corners of arena, 20 min test	-2.0519	4.1224	-0.074583	0.841	0.621
open field	percentage of total time in corners, habituation ratio, 20 min test	-0.19521	1.7888	-0.38597	0.989	0.914
open field	percentage of total time in corners, slope, 20 min test	0.39669	1.6546	-0.096144	0.956	0.812
open field	permanence time in center of arena, 20 min test	44.084	37.689	0.64900	0.567	0.249
open field	permanence time in corners of arena, 20 min test	-24.629	49.468	-0.074583	0.842	0.621
open field	permanence time in periphery of arena, 20 min test	-44.047	37.689	-0.64900	0.567	0.250
open field	total distance traveled, 20 min test	417.10	160.95	0.68591	0.0686	0.0134
open field	total number of rears, 20 min test	12.719	9.6621	0.52455	0.434	0.196
open field	whole arena average speed, 20 min test	0.34730	0.13421	0.68252	0.0692	0.0135
open field	whole arena resting time, 20 min test	-46.544	17.807	-0.72902	0.0637	0.0128
open field	whole arena time spent mobile, 20 min test	46.556	17.804	0.96993	0.0654	0.0127
open field	whole arena time spent vertical, 20 min test	1.7101	7.6793	0.024841	0.929	0.825
SHIRPA	locomotor activity (number of squares in the arena the mouse moves into with all four paws in first 30 s of test)	-2.3875	1.4942	-0.83367	0.423	0.125
startle / PPI	average baseline movement during background noise	0.046833	1.6664	0.12573	0.997	0.978
startle / PPI	average of each corrected maximum percent pre-pulse inhibition value	0.089124	0.051660	0.73603	0.402	0.0931
startle / PPI	average of each corrected percent pre-pulse inhibition value	0.073351	0.050902	0.64960	0.497	0.158
startle / PPI	average percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 74dB sound pressure level	10.752	5.6445	1.2409	0.798	0.0650
startle / PPI	average percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 78dB sound pressure level	10.362	5.4774	1.0042	0.384	0.0666
startle / PPI	average percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 82dB sound pressure level	4.2677	4.7889	0.36151	0.678	0.379
startle / PPI	average startle response to full pulse (120 dB)	114.09	46.446	1.7609	0.100	0.0190
startle / PPI	average startle response to full pulse (120 dB) preceded by pre-pulse, 74dB sound pressure level	72.570	48.469	1.3171	0.348	0.143
startle / PPI	average startle response to full pulse (120 dB) preceded by pre-pulse, 78dB sound pressure level	43.523	42.616	1.0136	0.530	0.314
startle / PPI	average startle response to full pulse (120 dB) preceded by pre-pulse, 82dB sound pressure level	38.607	33.454	1.0567	0.474	0.256
startle / PPI	average startle response to pre-pulse, 74dB sound pressure level	-0.72158	1.1992	-0.48100	0.904	0.551
startle / PPI	average startle response to pre-pulse, 78dB sound pressure level	-0.47617	1.9812	-0.32583	0.964	0.811
startle / PPI	average startle response to pre-pulse, 82dB sound pressure level	0.40025	2.1032	0.023121	0.968	0.850
startle / PPI	corrected average percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 74dB sound pressure level	0.11770	0.061180	1.1439	0.755	0.0625
startle / PPI	corrected average percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 78dB sound pressure level	0.089374	0.065770	0.68288	0.526	0.183
startle / PPI	corrected average percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 82dB sound pressure level	0.032508	0.059108	0.096884	0.796	0.586
startle / PPI	corrected average startle response to full pulse (120 dB) minus average baseline movement during background noise	114.05	46.041	1.7743	0.0962	0.0181
startle / PPI	corrected average startle response to pre-pulse and full pulse (120 dB) minus average startle response to same pre-pulse, 74dB sound pressure level	73.276	48.912	1.3271	0.348	0.143
startle / PPI	corrected average startle response to pre-pulse and full pulse (120 dB) minus average startle response to same pre-pulse, 78dB sound pressure level	43.999	43.217	1.0277	0.529	0.315
startle / PPI	corrected average startle response to pre-pulse and full pulse (120 dB) minus average startle response to same pre-pulse, 82dB sound pressure level	37.962	33.925	1.0616	0.488	0.271
startle / PPI	corrected maximum percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 74dB sound pressure level	0.13652	0.065010	1.1996	0.700	0.0430
startle / PPI	corrected maximum percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 78dB sound pressure level	0.097576	0.064380	0.68332	0.471	0.138
startle / PPI	corrected maximum percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 82dB sound pressure level	0.053296	0.059364	0.20613	0.635	0.375
startle / PPI	corrected maximum startle response to full pulse (120 dB) minus maximum baseline movement during background noise	367.61	165.61	1.6528	0.141	0.0328
startle / PPI	corrected maximum startle response to pre-pulse and full pulse (120 dB) minus maximum startle response to same pre-pulse, 74dB sound pressure level	215.89	179.59	1.1741	0.475	0.237
startle / PPI	corrected maximum startle response to pre-pulse and full pulse (120 dB) minus maximum startle response to same pre-pulse, 78dB sound pressure level	144.09	164.11	0.94565	0.601	0.386
startle / PPI	corrected maximum startle response to pre-pulse and full pulse (120 dB) minus maximum startle response to same pre-pulse, 82dB sound pressure level	119.40	133.45	0.95004	0.585	0.377
startle / PPI	maximum baseline movement during background noise	2.4065	6.0915	0.73787	0.937	0.695
startle / PPI	maximum percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 74dB sound pressure level	12.915	6.1227	1.3547	0.767	0.0421
startle / PPI	maximum percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 78dB sound pressure level	10.650	5.7573	0.90481	0.381	0.0726
startle / PPI	maximum percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse, 82dB sound pressure level	5.4733	5.1244	0.37651	0.582	0.293
startle / PPI	maximum startle response to full pulse (120 dB)	370.01	167.13	1.6638	0.143	0.0333
startle / PPI	maximum startle response to full pulse (120 dB) preceded by pre-pulse, 74dB sound pressure level	214.17	178.63	1.1658	0.481	0.238
startle / PPI	maximum startle response to full pulse (120 dB) preceded by pre-pulse, 78dB sound pressure level	142.76	163.31	0.93475	0.602	0.388
startle / PPI	maximum startle response to full pulse (120 dB) preceded by pre-pulse, 82dB sound pressure level	122.91	132.56	0.96556	0.574	0.360
startle / PPI	maximum startle response to pre-pulse, 74dB sound pressure level	-1.8756	2.7448	-0.50314	0.853	0.499
startle / PPI	maximum startle response to pre-pulse, 78dB sound pressure level	-1.3284	4.5651	-0.34510	0.960	0.773
startle / PPI	maximum startle response to pre-pulse, 82dB sound pressure level	2.7694	5.0096	0.33323	0.850	0.584

MULTIPLE (CATEGORICAL) TRAIT PROFILE PLOT — Early Adult Phenotyping study (EAP)

In this plot, data points are the computed genotype effect % vs. C57BL/6NJ controls, for all measured categorical phenotypes in JaxKOMP-EAP

Dimensions Width: × Height: px

Plot Options Group by Procedure

Include Sexes Data Both Females Males

Significance Threshold p-Value Threshold

Download Plot

Procedure	JaxKOMP-EAP Trait	Sex	Trait Effect	P-value

eye morphology	anterior chamber depth	females	1.0 %	1.0
eye morphology	anterior chamber depth	males	0.0 %	1.0
eye morphology	anterior chamber depth	both	1.0 %	1.0
eye morphology	bulging eye	females	1.0 %	1.0
eye morphology	bulging eye	males	0.0 %	1.0
eye morphology	bulging eye	both	1.0 %	1.00
eye morphology	cornea	females	11.0 %	0.257
eye morphology	cornea	males	12.0 %	0.0788
eye morphology	cornea	both	12.0 %	0.0444
eye morphology	cornea opacity	females	5.0 %	1.00
eye morphology	cornea opacity	males	1.0 %	1.0
eye morphology	cornea opacity	both	3.0 %	1.00
eye morphology	cornea vascularization	females	3.0 %	1.0
eye morphology	cornea vascularization	males	1.0 %	1.0
eye morphology	cornea vascularization	both	2.0 %	1.00
eye morphology	corneal deposits	females	2.0 %	1.0
eye morphology	corneal deposits	males	1.0 %	1.0
eye morphology	corneal deposits	both	1.0 %	1.00
eye morphology	corneal mineralization	females	2.0 %	1.0
eye morphology	corneal mineralization	males	1.0 %	1.0
eye morphology	corneal mineralization	both	1.0 %	1.00
eye morphology	corneal scleralization	females	3.0 %	1.00
eye morphology	corneal scleralization	males	1.0 %	1.0
eye morphology	corneal scleralization	both	2.0 %	1.00
eye morphology	corneal ulcer	females	1.0 %	1.0
eye morphology	corneal ulcer	males	1.0 %	1.0
eye morphology	corneal ulcer	both	1.0 %	1.00
eye morphology	eye closure	females	1.0 %	1.00
eye morphology	eye closure	males	0.0 %	1.0
eye morphology	eye closure	both	1.0 %	1.0
eye morphology	eye hemorrhage or blood presence	females	2.0 %	1.00
eye morphology	eye hemorrhage or blood presence	males	1.0 %	1.0
eye morphology	eye hemorrhage or blood presence	both	1.0 %	1.00
eye morphology	eyelid morphology	females	1.0 %	1.0
eye morphology	eyelid morphology	males	0.0 %	1.0
eye morphology	eyelid morphology	both	1.0 %	1.0
eye morphology	eyes (present, absent)	females	1.0 %	1.0
eye morphology	eyes (present, absent)	males	0.0 %	1.0
eye morphology	eyes (present, absent)	both	0.0 %	1.0
eye morphology	fusion between cornea and lens	females	4.0 %	1.00
eye morphology	fusion between cornea and lens	males	2.0 %	1.0
eye morphology	fusion between cornea and lens	both	3.0 %	1.00
eye morphology	iris pigmentation	females	2.0 %	1.0
eye morphology	iris pigmentation	males	1.0 %	1.0
eye morphology	iris pigmentation	both	2.0 %	1.00
eye morphology	iris transillumination	females	2.0 %	1.00
eye morphology	iris transillumination	males	1.0 %	1.0
eye morphology	iris transillumination	both	1.0 %	1.00
eye morphology	irispupil	females	4.0 %	1.00
eye morphology	irispupil	males	3.0 %	1.0
eye morphology	irispupil	both	3.0 %	1.00
eye morphology	lacrimation	females	3.0 %	1.0
eye morphology	lacrimation	males	23.0 %	0.00400
eye morphology	lacrimation	both	10.0 %	0.0141
eye morphology	lens	females	10.0 %	1.00
eye morphology	lens	males	8.0 %	1.0
eye morphology	lens	both	9.0 %	1.0
eye morphology	lens opacity	females	28.0 %	0.0279
eye morphology	lens opacity	males	10.0 %	0.368
eye morphology	lens opacity	both	18.0 %	0.0309
eye morphology	narrow eye opening	females	2.0 %	1.0
eye morphology	narrow eye opening	males	1.0 %	1.0
eye morphology	narrow eye opening	both	1.0 %	1.0
eye morphology	optic disc	females	4.0 %	1.00
eye morphology	optic disc	males	2.0 %	1.0
eye morphology	optic disc	both	3.0 %	1.00
eye morphology	persistence of hyaloid vascular system	females	11.0 %	0.321
eye morphology	persistence of hyaloid vascular system	males	5.0 %	1.0
eye morphology	persistence of hyaloid vascular system	both	5.0 %	0.400
eye morphology	pupil dilation	females	2.0 %	1.0
eye morphology	pupil dilation	males	1.0 %	1.0
eye morphology	pupil dilation	both	2.0 %	1.0
eye morphology	pupil light response	females	2.0 %	1.00
eye morphology	pupil light response	males	1.0 %	1.0
eye morphology	pupil light response	both	2.0 %	1.00
eye morphology	pupil position	females	4.0 %	1.00
eye morphology	pupil position	males	3.0 %	1.0
eye morphology	pupil position	both	4.0 %	1.00
eye morphology	pupil shape	females	3.0 %	1.00
eye morphology	pupil shape	males	2.0 %	1.0
eye morphology	pupil shape	both	3.0 %	1.00
eye morphology	retina	females	10.0 %	1.0
eye morphology	retina	males	7.0 %	0.610
eye morphology	retina	both	7.0 %	0.801
eye morphology	retinal blood vessels	females	4.0 %	1.0
eye morphology	retinal blood vessels	males	2.0 %	1.0
eye morphology	retinal blood vessels	both	3.0 %	1.0
eye morphology	retinal blood vessels pattern	females	5.0 %	1.0
eye morphology	retinal blood vessels pattern	males	2.0 %	1.0
eye morphology	retinal blood vessels pattern	both	4.0 %	1.00
eye morphology	retinal blood vessels structure	females	4.0 %	1.00
eye morphology	retinal blood vessels structure	males	2.0 %	1.0
eye morphology	retinal blood vessels structure	both	3.0 %	1.00
eye morphology	retinal pigmentation	females	12.0 %	1.0
eye morphology	retinal pigmentation	males	10.0 %	0.432
eye morphology	retinal pigmentation	both	7.0 %	0.738
eye morphology	retinal structure	females	4.0 %	1.00
eye morphology	retinal structure	males	2.0 %	1.0
eye morphology	retinal structure	both	3.0 %	1.00
eye morphology	synechia	females	4.0 %	1.0
eye morphology	synechia	males	2.0 %	1.0
eye morphology	synechia	both	3.0 %	1.00
eye morphology	vitreous	females	4.0 %	1.00
eye morphology	vitreous	males	2.0 %	1.0
eye morphology	vitreous	both	3.0 %	1.00
SHIRPA	activity body position	females	1.0 %	1.0
SHIRPA	activity body position	males	2.0 %	1.0
SHIRPA	activity body position	both	1.0 %	1.00
SHIRPA	aggression	females	0.0 %	1.00
SHIRPA	aggression	males	1.0 %	1.0
SHIRPA	aggression	both	1.0 %	1.0
SHIRPA	body length	females	0.0 %	1.0
SHIRPA	body length	males	0.0 %	1.00
SHIRPA	body length	both	0.0 %	1.00
SHIRPA	body position	females	0.0 %	1.0
SHIRPA	body position	males	1.0 %	1.0
SHIRPA	body position	both	0.0 %	1.0
SHIRPA	body thickness	females	1.0 %	1.0
SHIRPA	body thickness	males	0.0 %	1.0
SHIRPA	body thickness	both	0.0 %	1.0
SHIRPA	coat color abdomen	females	3.0 %	1.00
SHIRPA	coat color abdomen	males	4.0 %	1.0
SHIRPA	coat color abdomen	both	4.0 %	1.0
SHIRPA	coat color back	females	0.0 %	1.0
SHIRPA	coat color back	males	0.0 %	1.00
SHIRPA	coat color back	both	0.0 %	1.00
SHIRPA	coat color head	females	0.0 %	1.0
SHIRPA	coat color head	males	0.0 %	1.00
SHIRPA	coat color head	both	0.0 %	1.0
SHIRPA	coat color pattern abdomen	females	1.0 %	1.0
SHIRPA	coat color pattern abdomen	males	1.0 %	1.0
SHIRPA	coat color pattern abdomen	both	1.0 %	1.0
SHIRPA	coat color pattern back	females	0.0 %	1.0
SHIRPA	coat color pattern back	males	0.0 %	1.00
SHIRPA	coat color pattern back	both	0.0 %	1.0
SHIRPA	coat color pattern head	females	0.0 %	1.0
SHIRPA	coat color pattern head	males	0.0 %	1.0
SHIRPA	coat color pattern head	both	0.0 %	1.00
SHIRPA	coat hair abdomen texture appearance	females	2.0 %	1.0
SHIRPA	coat hair abdomen texture appearance	males	2.0 %	1.0
SHIRPA	coat hair abdomen texture appearance	both	2.0 %	1.0
SHIRPA	coat hair back texture appearance	females	0.0 %	1.0
SHIRPA	coat hair back texture appearance	males	0.0 %	1.0
SHIRPA	coat hair back texture appearance	both	0.0 %	1.0
SHIRPA	coat hair distribution abdomen	females	0.0 %	1.0
SHIRPA	coat hair distribution abdomen	males	1.0 %	1.00
SHIRPA	coat hair distribution abdomen	both	1.0 %	1.00
SHIRPA	coat hair distribution back	females	0.0 %	1.0
SHIRPA	coat hair distribution back	males	0.0 %	1.0
SHIRPA	coat hair distribution back	both	0.0 %	1.0
SHIRPA	coat hair distribution head	females	1.0 %	1.00
SHIRPA	coat hair distribution head	males	12.0 %	0.0465
SHIRPA	coat hair distribution head	both	6.0 %	0.104
SHIRPA	coat hair head texture appearance	females	0.0 %	1.00
SHIRPA	coat hair head texture appearance	males	0.0 %	1.0
SHIRPA	coat hair head texture appearance	both	0.0 %	1.0
SHIRPA	contact righting	females	5.0 %	1.0
SHIRPA	contact righting	males	5.0 %	1.00
SHIRPA	contact righting	both	5.0 %	1.00
SHIRPA	ear morphology	females	0.0 %	1.0
SHIRPA	ear morphology	males	0.0 %	1.0
SHIRPA	ear morphology	both	0.0 %	1.0
SHIRPA	fat distribution	females	0.0 %	1.0
SHIRPA	fat distribution	males	0.0 %	1.0
SHIRPA	fat distribution	both	0.0 %	1.00
SHIRPA	forelimb digit number	females	0.0 %	1.00
SHIRPA	forelimb digit number	males	0.0 %	1.0
SHIRPA	forelimb digit number	both	0.0 %	1.00
SHIRPA	forelimb digit position	females	0.0 %	1.0
SHIRPA	forelimb digit position	males	0.0 %	1.0
SHIRPA	forelimb digit position	both	0.0 %	1.0
SHIRPA	forelimb digit shape	females	0.0 %	1.0
SHIRPA	forelimb digit shape	males	0.0 %	1.0
SHIRPA	forelimb digit shape	both	0.0 %	1.0
SHIRPA	forelimb digit size	females	0.0 %	1.0
SHIRPA	forelimb digit size	males	0.0 %	1.0
SHIRPA	forelimb digit size	both	0.0 %	1.0
SHIRPA	forelimb footpads	females	0.0 %	1.0
SHIRPA	forelimb footpads	males	0.0 %	1.0
SHIRPA	forelimb footpads	both	0.0 %	1.0
SHIRPA	forelimb nail length	females	0.0 %	1.0
SHIRPA	forelimb nail length	males	0.0 %	1.0
SHIRPA	forelimb nail length	both	0.0 %	1.0
SHIRPA	forelimb nail number	females	0.0 %	1.0
SHIRPA	forelimb nail number	males	0.0 %	1.0
SHIRPA	forelimb nail number	both	0.0 %	1.0
SHIRPA	forelimb nail position	females	0.0 %	1.0
SHIRPA	forelimb nail position	males	0.0 %	1.0
SHIRPA	forelimb nail position	both	0.0 %	1.0
SHIRPA	forelimb nail shape	females	0.0 %	1.0
SHIRPA	forelimb nail shape	males	0.0 %	1.0
SHIRPA	forelimb nail shape	both	0.0 %	1.0
SHIRPA	forelimbs position	females	0.0 %	1.0
SHIRPA	forelimbs position	males	0.0 %	1.0
SHIRPA	forelimbs position	both	0.0 %	1.0
SHIRPA	forelimbs shape	females	0.0 %	1.0
SHIRPA	forelimbs shape	males	0.0 %	1.0
SHIRPA	forelimbs shape	both	0.0 %	1.0
SHIRPA	forelimbs size	females	0.0 %	1.0
SHIRPA	forelimbs size	males	0.0 %	1.0
SHIRPA	forelimbs size	both	0.0 %	1.0
SHIRPA	forepaw position	females	0.0 %	1.0
SHIRPA	forepaw position	males	0.0 %	1.0
SHIRPA	forepaw position	both	0.0 %	1.0
SHIRPA	forepaw shape	females	0.0 %	1.0
SHIRPA	forepaw shape	males	0.0 %	1.0
SHIRPA	forepaw shape	both	0.0 %	1.0
SHIRPA	forepaw size	females	0.0 %	1.0
SHIRPA	forepaw size	males	0.0 %	1.0
SHIRPA	forepaw size	both	0.0 %	1.0
SHIRPA	gait (fluidity)	females	0.0 %	1.0
SHIRPA	gait (fluidity)	males	0.0 %	1.00
SHIRPA	gait (fluidity)	both	0.0 %	1.00
SHIRPA	genitalia morphology	females	0.0 %	1.00
SHIRPA	genitalia morphology	males	0.0 %	1.0
SHIRPA	genitalia morphology	both	0.0 %	1.00
SHIRPA	genitalia presence	females	0.0 %	1.0
SHIRPA	genitalia presence	males	0.0 %	1.0
SHIRPA	genitalia presence	both	0.0 %	1.0
SHIRPA	genitalia size	females	0.0 %	1.0
SHIRPA	genitalia size	males	0.0 %	1.0
SHIRPA	genitalia size	both	0.0 %	1.0
SHIRPA	head bobbing	females	0.0 %	1.0
SHIRPA	head bobbing	males	0.0 %	1.0
SHIRPA	head bobbing	both	0.0 %	1.0
SHIRPA	head morphology	females	0.0 %	1.0
SHIRPA	head morphology	males	0.0 %	1.00
SHIRPA	head morphology	both	0.0 %	1.0
SHIRPA	head size	females	0.0 %	1.0
SHIRPA	head size	males	0.0 %	1.0
SHIRPA	head size	both	0.0 %	1.00
SHIRPA	hindlimb digit number	females	1.0 %	1.00
SHIRPA	hindlimb digit number	males	0.0 %	1.0
SHIRPA	hindlimb digit number	both	0.0 %	1.00
SHIRPA	hindlimb digit position	females	0.0 %	1.0
SHIRPA	hindlimb digit position	males	0.0 %	1.0
SHIRPA	hindlimb digit position	both	0.0 %	1.0
SHIRPA	hindlimb digit shape	females	0.0 %	1.0
SHIRPA	hindlimb digit shape	males	0.0 %	1.0
SHIRPA	hindlimb digit shape	both	0.0 %	1.0
SHIRPA	hindlimb digit size	females	0.0 %	1.00
SHIRPA	hindlimb digit size	males	0.0 %	1.0
SHIRPA	hindlimb digit size	both	0.0 %	1.00
SHIRPA	hindlimb nail length	females	0.0 %	1.0
SHIRPA	hindlimb nail length	males	0.0 %	1.0
SHIRPA	hindlimb nail length	both	0.0 %	1.00
SHIRPA	hindlimb nail number	females	0.0 %	1.0
SHIRPA	hindlimb nail number	males	1.0 %	1.0
SHIRPA	hindlimb nail number	both	0.0 %	1.00
SHIRPA	hindlimb nail position	females	0.0 %	1.0
SHIRPA	hindlimb nail position	males	0.0 %	1.0
SHIRPA	hindlimb nail position	both	0.0 %	1.0
SHIRPA	hindlimb nail shape	females	0.0 %	1.0
SHIRPA	hindlimb nail shape	males	0.0 %	1.0
SHIRPA	hindlimb nail shape	both	0.0 %	1.0
SHIRPA	hindlimbs footpads	females	0.0 %	1.0
SHIRPA	hindlimbs footpads	males	0.0 %	1.0
SHIRPA	hindlimbs footpads	both	0.0 %	1.0
SHIRPA	hindlimbs position	females	0.0 %	1.0
SHIRPA	hindlimbs position	males	0.0 %	1.0
SHIRPA	hindlimbs position	both	0.0 %	1.0
SHIRPA	hindlimbs shape	females	0.0 %	1.0
SHIRPA	hindlimbs shape	males	0.0 %	1.0
SHIRPA	hindlimbs shape	both	0.0 %	1.0
SHIRPA	hindlimbs size	females	0.0 %	1.0
SHIRPA	hindlimbs size	males	0.0 %	1.0
SHIRPA	hindlimbs size	both	0.0 %	1.0
SHIRPA	hindpaw position	females	0.0 %	1.0
SHIRPA	hindpaw position	males	0.0 %	1.0
SHIRPA	hindpaw position	both	0.0 %	1.0
SHIRPA	hindpaw shape	females	0.0 %	1.0
SHIRPA	hindpaw shape	males	0.0 %	1.0
SHIRPA	hindpaw shape	both	0.0 %	1.0
SHIRPA	hindpaw size	females	0.0 %	1.0
SHIRPA	hindpaw size	males	0.0 %	1.0
SHIRPA	hindpaw size	both	0.0 %	1.0
SHIRPA	limb grasp	females	9.0 %	1.00
SHIRPA	limb grasp	males	6.0 %	1.0
SHIRPA	limb grasp	both	7.0 %	0.624
SHIRPA	lower lip morphology	females	0.0 %	1.0
SHIRPA	lower lip morphology	males	0.0 %	1.0
SHIRPA	lower lip morphology	both	0.0 %	1.0
SHIRPA	lower teeth appearance	females	0.0 %	1.0
SHIRPA	lower teeth appearance	males	0.0 %	1.00
SHIRPA	lower teeth appearance	both	0.0 %	1.00
SHIRPA	mouth morphology	females	0.0 %	1.0
SHIRPA	mouth morphology	males	0.0 %	1.00
SHIRPA	mouth morphology	both	0.0 %	1.00
SHIRPA	salivation	females	0.0 %	1.0
SHIRPA	salivation	males	0.0 %	1.0
SHIRPA	salivation	both	0.0 %	1.0
SHIRPA	skin color back paws	females	0.0 %	1.0
SHIRPA	skin color back paws	males	0.0 %	1.0
SHIRPA	skin color back paws	both	0.0 %	1.0
SHIRPA	skin color ear	females	0.0 %	1.0
SHIRPA	skin color ear	males	0.0 %	1.0
SHIRPA	skin color ear	both	0.0 %	1.0
SHIRPA	skin color front paws	females	0.0 %	1.0
SHIRPA	skin color front paws	males	0.0 %	1.0
SHIRPA	skin color front paws	both	0.0 %	1.0
SHIRPA	skin color snout	females	0.0 %	1.0
SHIRPA	skin color snout	males	0.0 %	1.0
SHIRPA	skin color snout	both	0.0 %	1.0
SHIRPA	skin color tail	females	0.0 %	1.0
SHIRPA	skin color tail	males	0.0 %	1.0
SHIRPA	skin color tail	both	0.0 %	1.0
SHIRPA	skin color whole body	females	0.0 %	1.0
SHIRPA	skin color whole body	males	0.0 %	1.0
SHIRPA	skin color whole body	both	0.0 %	1.0
SHIRPA	skin texture back paw	females	0.0 %	1.0
SHIRPA	skin texture back paw	males	0.0 %	1.0
SHIRPA	skin texture back paw	both	0.0 %	1.0
SHIRPA	skin texture ear	females	0.0 %	1.0
SHIRPA	skin texture ear	males	0.0 %	1.0
SHIRPA	skin texture ear	both	0.0 %	1.0
SHIRPA	skin texture front paws	females	0.0 %	1.0
SHIRPA	skin texture front paws	males	0.0 %	1.0
SHIRPA	skin texture front paws	both	0.0 %	1.0
SHIRPA	skin texture snout	females	0.0 %	1.0
SHIRPA	skin texture snout	males	0.0 %	1.0
SHIRPA	skin texture snout	both	0.0 %	1.0
SHIRPA	skin texture tail	females	0.0 %	1.0
SHIRPA	skin texture tail	males	0.0 %	1.0
SHIRPA	skin texture tail	both	0.0 %	1.0
SHIRPA	skin texture whole body	females	0.0 %	1.0
SHIRPA	skin texture whole body	males	0.0 %	1.00
SHIRPA	skin texture whole body	both	0.0 %	1.00
SHIRPA	snout size	females	0.0 %	1.0
SHIRPA	snout size	males	1.0 %	1.0
SHIRPA	snout size	both	0.0 %	1.0
SHIRPA	startle response	females	0.0 %	1.00
SHIRPA	startle response	males	0.0 %	1.00
SHIRPA	startle response	both	0.0 %	1.00
SHIRPA	tail curvature	females	0.0 %	1.00
SHIRPA	tail curvature	males	0.0 %	1.0
SHIRPA	tail curvature	both	0.0 %	1.0
SHIRPA	tail elevation	females	1.0 %	1.00
SHIRPA	tail elevation	males	11.0 %	0.142
SHIRPA	tail elevation	both	5.0 %	0.202
SHIRPA	tail length	females	0.0 %	1.0
SHIRPA	tail length	males	0.0 %	1.0
SHIRPA	tail length	both	0.0 %	1.00
SHIRPA	tail morphology	females	0.0 %	1.00
SHIRPA	tail morphology	males	0.0 %	1.0
SHIRPA	tail morphology	both	0.0 %	1.00
SHIRPA	tail presence	females	0.0 %	1.0
SHIRPA	tail presence	males	0.0 %	1.0
SHIRPA	tail presence	both	0.0 %	1.0
SHIRPA	tail shape	females	0.0 %	1.0
SHIRPA	tail shape	males	0.0 %	1.0
SHIRPA	tail shape	both	0.0 %	1.00
SHIRPA	tail thickness	females	0.0 %	1.0
SHIRPA	tail thickness	males	0.0 %	1.0
SHIRPA	tail thickness	both	0.0 %	1.0
SHIRPA	teeth presence	females	0.0 %	1.0
SHIRPA	teeth presence	males	0.0 %	1.00
SHIRPA	teeth presence	both	0.0 %	1.00
SHIRPA	transfer arousal	females	1.0 %	1.0
SHIRPA	transfer arousal	males	2.0 %	1.00
SHIRPA	transfer arousal	both	1.0 %	1.0
SHIRPA	tremor	females	0.0 %	1.0
SHIRPA	tremor	males	0.0 %	1.0
SHIRPA	tremor	both	0.0 %	1.00
SHIRPA	trunk curl	females	0.0 %	1.00
SHIRPA	trunk curl	males	0.0 %	1.0
SHIRPA	trunk curl	both	0.0 %	1.0
SHIRPA	unexpected behaviors (circling, head bobbing, jumping, retropulsion)	females	0.0 %	1.0
SHIRPA	unexpected behaviors (circling, head bobbing, jumping, retropulsion)	males	0.0 %	1.0
SHIRPA	unexpected behaviors (circling, head bobbing, jumping, retropulsion)	both	0.0 %	1.00
SHIRPA	upper lip morphology	females	0.0 %	1.0
SHIRPA	upper lip morphology	males	0.0 %	1.0
SHIRPA	upper lip morphology	both	0.0 %	1.0
SHIRPA	upper teeth appearance	females	0.0 %	1.0
SHIRPA	upper teeth appearance	males	0.0 %	1.0
SHIRPA	upper teeth appearance	both	0.0 %	1.00
SHIRPA	vibrissae appearance	females	2.0 %	1.0
SHIRPA	vibrissae appearance	males	1.0 %	1.0
SHIRPA	vibrissae appearance	both	1.0 %	1.0
SHIRPA	vibrissae presence	females	2.0 %	1.00
SHIRPA	vibrissae presence	males	1.0 %	1.0
SHIRPA	vibrissae presence	both	2.0 %	1.0
SHIRPA	vocalization	females	2.0 %	1.00
SHIRPA	vocalization	males	2.0 %	1.0
SHIRPA	vocalization	both	2.0 %	1.00

GENOTYPE CORRELATION PLOT

Correlate Anapc1^em1(IMPC)J/Mmjax -/+ with genotype:

This genotype correlation visualization can include both EAP and LAP measures.