JaxKOMP-LAP
effect sizes: Hlcsem1(IMPC)J/Mmjax -/+
Gene Hlcs
MULTIPLE (NUMERIC) TRAIT PROFILE PLOT — Late Adult Phenotyping study (LAP)
In this plot, data points are the computed genotype effect size vs. C57BL/6NJ controls,
for all measured numeric phenotypes in
JaxKOMP-LAP
Procedure |
JaxKOMP-LAP Trait |
Trait Effect |
Trait Effect SE |
Trait Effect RankZ |
Adjusted p-value |
Unadjusted p-value |
|---|---|---|---|---|---|---|
| body composition | body length | -0.14118 | 0.044621 | -0.75180 | 0.0655 | 0.00747 |
| body composition | body weight (at time of DXA) | -3.2774 | 2.4844 | -0.33003 | 0.367 | 0.208 |
| body composition | bone area, whole body scan, head excluded | -0.24322 | 0.24493 | -0.086543 | 0.612 | 0.339 |
| body composition | bone mineral content of whole body scan, head excluded | -0.041274 | 0.014982 | -0.72979 | 0.126 | 0.0164 |
| body composition | bone mineral content to body weight ratio | -0.00045536 | 0.00037128 | -0.19572 | 0.549 | 0.242 |
| body composition | bone mineral density of whole body scan, head excluded | -0.0022855 | 0.00078569 | -1.1297 | 0.0940 | 0.0114 |
| body composition | fat tissue mass of whole body scan, head excluded | -0.73219 | 0.76238 | -0.70187 | 0.618 | 0.354 |
| body composition | fat tissue mass to body weight ratio | 0.0059057 | 0.019909 | 0.086543 | 0.911 | 0.771 |
| body composition | lean tissue mass of whole body scan, head excluded | -0.84734 | 1.0018 | -0.59518 | 0.704 | 0.413 |
| body composition | lean tissue mass to body weight ratio | 0.013080 | 0.016625 | 0.51945 | 0.726 | 0.446 |
| body composition | percent fat, whole body scan, head excluded | -0.65276 | 1.7169 | -0.35293 | 0.874 | 0.710 |
| body composition | ratio of soft-tissue attenuation coefficients | 0.00076911 | 0.0019121 | 0.32151 | 0.860 | 0.694 |
| body composition | tissue area | -1.8470 | 0.22926 | -1.6284 | 0.000238 | 0.00000207 |
| body composition | total tissue mass, whole body scan, head excluded | -1.5795 | 0.58657 | -1.4835 | 0.272 | 0.0184 |
| glucose tolerance test | amount glucose injected | -0.43035 | 5.2508 | -0.27036 | 0.968 | 0.936 |
| glucose tolerance test | plasma glucose, 0min | 24.784 | 8.1991 | 1.5772 | 0.122 | 0.00809 |
| glucose tolerance test | plasma glucose, 15min | -30.443 | 50.709 | -0.74047 | 0.875 | 0.557 |
| glucose tolerance test | plasma glucose, 30min | -66.286 | 61.594 | -1.2016 | 0.655 | 0.298 |
| glucose tolerance test | plasma glucose, 60min | -7.6866 | 48.683 | -0.40086 | 0.982 | 0.877 |
| glucose tolerance test | plasma glucose, 120min | -85.797 | 28.267 | -1.7394 | 0.141 | 0.00788 |
| heart weight | heart weight, normalized to body weight | 0.22082 | 0.10294 | 0.76471 | 0.368 | 0.0476 |
| heart weight | heart weight, weight | 3.0220 | 7.8843 | 0.17374 | 0.895 | 0.707 |
| light / dark | latency to enter dark zone, 20 min test | -63.663 | 242.40 | -0.23269 | 0.905 | 0.797 |
| light / dark | number of transitions between light and dark zones, 20 min test | 2.6667 | 12.079 | 0.46770 | 0.969 | 0.828 |
| light / dark | percentage of total time in dark zone, 20 min test | -7.5862 | 9.7788 | -0.90023 | 0.805 | 0.451 |
| light / dark | percentage of total time in light zone, 20 min test | 7.5862 | 9.7788 | 0.90023 | 0.805 | 0.451 |
| light / dark | time mobile in dark zone, 20 min test | -10.541 | 36.238 | -0.78577 | 0.921 | 0.775 |
| light / dark | time mobile in light zone, 20 min test | -6.9335 | 16.607 | -0.58284 | 0.892 | 0.683 |
| light / dark | time spent in dark zone, 20 min test | -33.682 | 190.65 | -0.53594 | 0.971 | 0.862 |
| light / dark | time spent in light zone, 20 min test | 33.682 | 190.65 | 0.53594 | 0.971 | 0.862 |
| SHIRPA | locomotor activity (number of squares in the arena the mouse moves into with all four paws in first 30 s of test) | -4.4131 | 1.5116 | -1.6607 | 0.0851 | 0.00879 |
MULTIPLE (CATEGORICAL) TRAIT PROFILE PLOT — Late Adult Phenotyping study (LAP)
In this plot, data points are the computed genotype effect % vs. C57BL/6NJ controls,
for all measured categorical phenotypes in
JaxKOMP-LAP
GENOTYPE CORRELATION PLOT
This genotype correlation visualization can include both EAP and LAP measures.
Correlate Hlcsem1(IMPC)J/Mmjax -/+ with genotype:
This genotype correlation visualization can include both EAP and LAP measures.
