Project measure / variable:   Shin1   OFT_activity

ID, description, units MPD:54504   OFT_activity   distance traveled per second during first 5 min   [cm/s]  
Data set, strains Shin1   inbred   11 strains     sex: m     age: 12-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Shin1 - distance traveled per second during first 5 min



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means5.44   cm/s
Median of the strain means6.21   cm/s
SD of the strain means± 2.51
Coefficient of variation (CV)0.461
Min–max range of strain means1.53   –   9.27   cm/s
Mean sample size per strain10.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 697.8362 69.7836 30.2263 < 0.0001
Residuals 103 237.7964 2.3087


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.53 0.995   9 0.332 0.65 0.45, 2.73 -1.56
129S4/SvJaeJ m 1.88 1.06   13 0.293 0.562 0.44, 3.71 -1.42
AKR/J m 6.32 1.58   10 0.501 0.251 3.27, 8.28 0.35
BALB/cByJ m 4.4 1.91   9 0.637 0.434 1.04, 6.75 -0.41
BTBR T+ Itpr3tf/J m 6.21 2.69   9 0.897 0.433 2.68, 11.2 0.31
C3H/HeJ m 3.06 0.892   15 0.23 0.291 1.66, 5.0 -0.95
C57BL/6J m 7.03 1.14   9 0.38 0.162 4.97, 8.52 0.63
C57BL/6NTac m 5.27 0.925   11 0.279 0.176 3.58, 6.78 -0.07
DBA/2J m 8.33 1.31   8 0.462 0.157 6.54, 10.2 1.15
FVB/NJ m 6.53 1.48   8 0.524 0.227 3.77, 8.02 0.44
NOD/ShiLtJ m 9.27 2.03   13 0.563 0.219 5.82, 12.3 1.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.5322 0.5065 2.5367 0.5277
129S4/SvJaeJ m 1.8762 0.4214 2.7119 1.0404
AKR/J m 6.318 0.4805 7.2709 5.3651
BALB/cByJ m 4.4011 0.5065 5.4056 3.3966
BTBR T+ Itpr3tf/J m 6.2144 0.5065 7.2189 5.21
C3H/HeJ m 3.0633 0.3923 3.8414 2.2853
C57BL/6J m 7.0344 0.5065 8.0389 6.03
C57BL/6NTac m 5.2682 0.4581 6.1768 4.3596
DBA/2J m 8.33 0.5372 9.3954 7.2646
FVB/NJ m 6.5275 0.5372 7.5929 5.4621
NOD/ShiLtJ m 9.27 0.4214 10.1058 8.4342




  GWAS USING LINEAR MIXED MODELS