From here you can download entire MPD data tables. An md5 checksum file is available.
| File name and description | File size | Modified |
| measurements.csv
Metadata for all phenotype strain survey measurements (traits) in MPD. Includes descriptions, units, variable names, and other attributes. |
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| qtlphenomeas.csv
Metadata for all QTL Archive phenotype measurements (traits). Includes descriptions, units, variable names, and other attributes. |
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| mpd_datasets_metadata.xml.gz
An XML representation of the metadata for all data sets in MPD. |
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| straininfo.csv
Strain name, vendor, stock number, and other attributes of each mouse strain with data in MPD. One row per strain. |
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| datasets_strains.csv
Indicates which mouse strains are involved in each data set, in a many-to-many mapping table. |
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| ontology_mappings.csv
Ontology term mappings (MP, VT, MA) for phenotype strain survey measurements as well as all QTL Archive phenotype measurements. |
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| strainmeans.csv.gz
Strain means, SD, SEM, N, CV etc. for all numeric phenotype strain survey measurements (traits) in MPD. |
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| categodata.csv
Strain consensus values for all categorical (non-numeric) phenotype strain survey measurements (traits) in MPD. |
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| animaldatapoints.csv.gz
Individual mouse readings for all phenotype strain survey measurements (traits) in MPD. |
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| measstats.csv.gz
Overall averages (all strains combined), with SD, etc. for each phenotype strain survey measurement in MPD. |
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| sexdiff.csv.gz
Sex differences (female vs. male by strain) for each phenotype strain survey measurement in MPD. |
Other possibilities:
To download a contributed data set, use MPD search to locate the data set's page, and download it from there.
To download data for a certain mouse strain, use MPD search to locate the strain's page, and download from there.
Other specific downloads can be prepared for you by request at phenome@jax.org