Project measure / variable:   Odet1   seminif_length

ID, description, units MPD:53722   seminif_length   seminiferious epithelium length, transverse section   [cm]  
Data set, strains Odet1   inbred w/CC8   8 strains     sex: m     age: 10-66wks
Procedure histopathology
Ontology mappings

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  STRAIN COMPARISON PLOT
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Odet1 - seminiferious epithelium length, transverse section



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means16.2   cm
Median of the strain means15.6   cm
SD of the strain means± 2.51
Coefficient of variation (CV)0.156
Min–max range of strain means12.8   –   19.2   cm
Mean sample size per strain26.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 1132.9504 161.8501 26.3511 < 0.0001
Residuals 200 1228.4108 6.1421


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 16.2 2.97   32 0.525 0.183 7.04, 21.3 0.01
A/J m 15.0 2.46   26 0.482 0.164 9.98, 19.1 -0.46
C57BL/6J m 19.2 2.2   36 0.367 0.115 13.3, 24.0 1.21
CAST/EiJ m 12.8 1.68   19 0.385 0.131 8.34, 14.7 -1.34
NOD/ShiLtJ m 18.8 2.21   26 0.434 0.118 14.0, 22.7 1.05
NZO/HlLtJ m 18.8 2.7   22 0.577 0.144 10.8, 23.5 1.05
PWK/PhJ m 15.0 2.8   17 0.68 0.186 9.42, 18.6 -0.46
WSB/EiJ m 13.5 2.51   30 0.458 0.186 8.52, 18.7 -1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 16.2159 0.4381 17.0798 15.352
A/J m 14.9777 0.486 15.9361 14.0193
C57BL/6J m 19.1911 0.4131 20.0056 18.3766
CAST/EiJ m 12.8063 0.5686 13.9275 11.6852
NOD/ShiLtJ m 18.7604 0.486 19.7188 17.802
NZO/HlLtJ m 18.76 0.5284 19.8019 17.7181
PWK/PhJ m 15.0465 0.6011 16.2317 13.8612
WSB/EiJ m 13.4833 0.4525 14.3756 12.5911




  GWAS USING LINEAR MIXED MODELS