Project measure / variable:   HMDPpheno9   SGPC_1

ID, description, units MPD:50419   SGPC_1   liver 1-stearoylglycerophosphocholine (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-stearoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means3253064   None
Median of the strain means2298278   None
SD of the strain means± 2739142
Coefficient of variation (CV)0.842
Min–max range of strain means381174   –   16279348   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 216085634639692.0 10289792125699.6 1.3537 0.2109
Residuals 34 258446267469311.0 7601360807920.91


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 6970396.0 0.0   1   0.0 0.0 6970396.0, 6970396.0 1.36
A/J m 1121602.0 853072.0   2   603213.0 0.761 518389.0, 1724815.0 -0.78
AKR/J m 1017599.0 0.0   1   0.0 0.0 1017599.0, 1017599.0 -0.82
AXB10/PgnJ m 1952407.0 0.0   1   0.0 0.0 1952407.0, 1952407.0 -0.47
AXB12/PgnJ m 488407.0 0.0   1   0.0 0.0 488407.0, 488407.0 -1.01
AXB13/PgnJ m 818553.0 0.0   1   0.0 0.0 818553.0, 818553.0 -0.89
AXB15/PgnJ m 703678.0 0.0   1   0.0 0.0 703678.0, 703678.0 -0.93
AXB19a/PgnJ m 3052120.0 0.0   1   0.0 0.0 3052120.0, 3052120.0 -0.07
AXB19b/PgnJ m 6738714.0 417983.0   2   295558.0 0.062 6443156.0, 7034272.0 1.27
AXB19/PgnJ m 4244222.0 0.0   1   0.0 0.0 4244222.0, 4244222.0 0.36
AXB1/PgnJ m 10501780.0 0.0   1   0.0 0.0 10501780.0, 10501780.0 2.65
AXB23/PgnJ m 3379405.0 0.0   1   0.0 0.0 3379405.0, 3379405.0 0.05
AXB24/PgnJ m 5963791.0 7563193.0   2   5347985.0 1.27 615806.0, 11311776.0 0.99
AXB2/PgnJ m 1496801.0 0.0   1   0.0 0.0 1496801.0, 1496801.0 -0.64
AXB4/PgnJ m 2932713.0 0.0   1   0.0 0.0 2932713.0, 2932713.0 -0.12
AXB5/PgnJ m 1623056.0 0.0   1   0.0 0.0 1623056.0, 1623056.0 -0.6
AXB6/PgnJ m 1448002.0 0.0   1   0.0 0.0 1448002.0, 1448002.0 -0.66
AXB8/PgnJ m 1164554.0 0.0   1   0.0 0.0 1164554.0, 1164554.0 -0.76
BALB/cJ m 2448406.0 1149880.0   3 663884.0 0.47 1130797.0, 3249176.0 -0.29
BTBR T+ Itpr3tf/J m 2809561.0 0.0   1   0.0 0.0 2809561.0, 2809561.0 -0.16
BUB/BnJ m 4457522.0 0.0   1   0.0 0.0 4457522.0, 4457522.0 0.44
BXA11/PgnJ m 1642614.0 0.0   1   0.0 0.0 1642614.0, 1642614.0 -0.59
BXA12/PgnJ m 1617641.0 0.0   1   0.0 0.0 1617641.0, 1617641.0 -0.6
BXA13/PgnJ m 1817516.0 0.0   1   0.0 0.0 1817516.0, 1817516.0 -0.52
BXA14/PgnJ m 9515140.0 0.0   1   0.0 0.0 9515140.0, 9515140.0 2.29
BXA16/PgnJ m 1872586.0 657717.0   2   465076.0 0.351 1407510.0, 2337662.0 -0.5
BXA1/PgnJ m 2665330.0 0.0   1   0.0 0.0 2665330.0, 2665330.0 -0.21
BXA24/PgnJ m 1821758.0 0.0   1   0.0 0.0 1821758.0, 1821758.0 -0.52
BXA25/PgnJ m 813264.0 0.0   1   0.0 0.0 813264.0, 813264.0 -0.89
BXA26/PgnJ m 5809888.0 0.0   1   0.0 0.0 5809888.0, 5809888.0 0.93
BXA2/PgnJ m 1972504.0 0.0   1   0.0 0.0 1972504.0, 1972504.0 -0.47
BXA4/PgnJ m 1855820.0 0.0   1   0.0 0.0 1855820.0, 1855820.0 -0.51
BXA7/PgnJ m 1195208.0 0.0   1   0.0 0.0 1195208.0, 1195208.0 -0.75
BXA8/PgnJ m 997075.0 0.0   1   0.0 0.0 997075.0, 997075.0 -0.82
BXD11/TyJ m 1631555.0 0.0   1   0.0 0.0 1631555.0, 1631555.0 -0.59
BXD12/TyJ m 3803122.0 0.0   1   0.0 0.0 3803122.0, 3803122.0 0.2
BXD13/TyJ m 2296607.0 0.0   1   0.0 0.0 2296607.0, 2296607.0 -0.35
BXD14/TyJ m 4764234.0 0.0   1   0.0 0.0 4764234.0, 4764234.0 0.55
BXD15/TyJ m 4490295.0 0.0   1   0.0 0.0 4490295.0, 4490295.0 0.45
BXD18/TyJ m 1143044.0 0.0   1   0.0 0.0 1143044.0, 1143044.0 -0.77
BXD19/TyJ m 2524398.0 2606.0   2   1842.0 0.00103 2522556.0, 2526241.0 -0.27
BXD1/TyJ m 1821210.0 0.0   1   0.0 0.0 1821210.0, 1821210.0 -0.52
BXD20/TyJ m 4639464.0 0.0   1   0.0 0.0 4639464.0, 4639464.0 0.51
BXD21/TyJ m 1105925.0 0.0   1   0.0 0.0 1105925.0, 1105925.0 -0.78
BXD22/TyJ m 1449051.0 0.0   1   0.0 0.0 1449051.0, 1449051.0 -0.66
BXD24/TyJ m 2179561.0 0.0   1   0.0 0.0 2179561.0, 2179561.0 -0.39
BXD24/TyJ-Cep290rd16/J m 2201406.0 0.0   1   0.0 0.0 2201406.0, 2201406.0 -0.38
BXD28/TyJ m 1187748.0 51038.0   2   36089.0 0.043 1151659.0, 1223837.0 -0.75
BXD29-Tlr4lps-2J/J m 1408650.0 0.0   1   0.0 0.0 1408650.0, 1408650.0 -0.67
BXD2/TyJ m 3327456.0 0.0   1   0.0 0.0 3327456.0, 3327456.0 0.03
BXD32/TyJ m 381174.0 0.0   1   0.0 0.0 381174.0, 381174.0 -1.05
BXD33/TyJ m 7179342.0 0.0   1   0.0 0.0 7179342.0, 7179342.0 1.43
BXD34/TyJ m 816425.0 0.0   1   0.0 0.0 816425.0, 816425.0 -0.89
BXD36/TyJ m 1115250.0 0.0   1   0.0 0.0 1115250.0, 1115250.0 -0.78
BXD38/TyJ m 2656322.0 0.0   1   0.0 0.0 2656322.0, 2656322.0 -0.22
BXD39/TyJ m 1642168.0 0.0   1   0.0 0.0 1642168.0, 1642168.0 -0.59
BXD40/TyJ m 2909242.0 0.0   1   0.0 0.0 2909242.0, 2909242.0 -0.13
BXD42/TyJ m 2286537.0 0.0   1   0.0 0.0 2286537.0, 2286537.0 -0.35
BXD5/TyJ m 4296058.0 0.0   1   0.0 0.0 4296058.0, 4296058.0 0.38
BXD6/TyJ m 3198671.0 0.0   1   0.0 0.0 3198671.0, 3198671.0 -0.02
BXD8/TyJ m 618117.0 0.0   1   0.0 0.0 618117.0, 618117.0 -0.96
BXD9/TyJ m 3391286.0 0.0   1   0.0 0.0 3391286.0, 3391286.0 0.05
BXH10/TyJ m 1554885.0 0.0   1   0.0 0.0 1554885.0, 1554885.0 -0.62
BXH19/TyJ m 13311751.0 0.0   1   0.0 0.0 13311751.0, 13311751.0 3.67
BXH20/KccJ m 4905342.0 0.0   1   0.0 0.0 4905342.0, 4905342.0 0.6
BXH22/KccJ m 2136355.0 0.0   1   0.0 0.0 2136355.0, 2136355.0 -0.41
BXH2/TyJ m 2498400.0 0.0   1   0.0 0.0 2498400.0, 2498400.0 -0.28
BXH4/TyJ m 6572058.0 6328045.0   2   4474604.0 0.963 2097454.0, 11046662.0 1.21
BXH6/TyJ m 3426450.0 0.0   1   0.0 0.0 3426450.0, 3426450.0 0.06
BXH7/TyJ m 8376538.0 0.0   1   0.0 0.0 8376538.0, 8376538.0 1.87
BXH8/TyJ m 2287706.0 0.0   1   0.0 0.0 2287706.0, 2287706.0 -0.35
BXH9/TyJ m 3480824.0 0.0   1   0.0 0.0 3480824.0, 3480824.0 0.08
C3H/HeJ m 3175323.0 1538411.0   2   1087821.0 0.484 2087502.0, 4263144.0 -0.03
C57BL/6J m 849651.0 725684.0   5 324536.0 0.854 132440.0, 2019309.0 -0.88
C57L/J m 1406278.0 0.0   1   0.0 0.0 1406278.0, 1406278.0 -0.67
C58/J m 4713667.0 0.0   1   0.0 0.0 4713667.0, 4713667.0 0.53
CAST/EiJ m 4538816.0 0.0   1   0.0 0.0 4538816.0, 4538816.0 0.47
CBA/J m 821667.0 0.0   1   0.0 0.0 821667.0, 821667.0 -0.89
CE/J m 2648062.0 0.0   1   0.0 0.0 2648062.0, 2648062.0 -0.22
CXB11/HiAJ m 1633920.0 1461310.0   2   1033302.0 0.894 600618.0, 2667222.0 -0.59
CXB12/HiAJ m 1361427.0 1027574.0   2   726605.0 0.755 634823.0, 2088032.0 -0.69
CXB13/HiAJ m 5083776.0 6023004.0   3 3477383.0 1.18 1252187.0, 12026077.0 0.67
CXB1/ByJ m 6864426.0 3827571.0   3 2209849.0 0.558 2565815.0, 9903537.0 1.32
CXB2/ByJ m 922758.0 788431.0   3 455201.0 0.854 27428.0, 1513294.0 -0.85
CXB3/ByJ m 1986745.0 908861.0   2   642662.0 0.457 1344083.0, 2629407.0 -0.46
CXB4/ByJ m 2299948.0 921475.0   2   651581.0 0.401 1648366.0, 2951529.0 -0.35
CXB6/ByJ m 1228451.0 1935663.0   3 1117555.0 1.58 58638.0, 3462734.0 -0.74
CXB7/ByJ m 2500348.0 1779118.0   2   1258027.0 0.712 1242321.0, 3758374.0 -0.27
CXB8/HiAJ m 3270694.0 1859646.0   3 1073667.0 0.569 1136075.0, 4540080.0 0.01
CXB9/HiAJ m 925640.0 1181557.0   3 682172.0 1.28 48917.0, 2269316.0 -0.85
DBA/2J m 3290654.0 2852713.0   4 1426356.0 0.867 1657912.0, 7545562.0 0.01
FVB/NJ m 4296021.0 0.0   1   0.0 0.0 4296021.0, 4296021.0 0.38
I/LnJ m 7898040.0 0.0   1   0.0 0.0 7898040.0, 7898040.0 1.7
KK/HlJ m 10183885.0 0.0   1   0.0 0.0 10183885.0, 10183885.0 2.53
LG/J m 6049082.0 0.0   1   0.0 0.0 6049082.0, 6049082.0 1.02
LP/J m 1517096.0 0.0   1   0.0 0.0 1517096.0, 1517096.0 -0.63
MA/MyJ m 2114510.0 0.0   1   0.0 0.0 2114510.0, 2114510.0 -0.42
NOD/ShiLtJ m 1616763.0 0.0   1   0.0 0.0 1616763.0, 1616763.0 -0.6
NON/ShiLtJ m 16279348.0 0.0   1   0.0 0.0 16279348.0, 16279348.0 4.76
NZW/LacJ m 2560674.0 0.0   1   0.0 0.0 2560674.0, 2560674.0 -0.25
PL/J m 6220834.0 0.0   1   0.0 0.0 6220834.0, 6220834.0 1.08
RIIIS/J m 1406208.0 0.0   1   0.0 0.0 1406208.0, 1406208.0 -0.67
SEA/GnJ m 4347500.0 0.0   1   0.0 0.0 4347500.0, 4347500.0 0.4
SJL/J m 7680334.0 0.0   1   0.0 0.0 7680334.0, 7680334.0 1.62
SM/J m 2029379.0 0.0   1   0.0 0.0 2029379.0, 2029379.0 -0.45
SWR/J m 3158567.0 0.0   1   0.0 0.0 3158567.0, 3158567.0 -0.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1121601.85 1949533.3811 5083530.3594 0.0
AXB19b/PgnJ m 6738714.0 1949533.3811 10700642.5094 2776785.4906
AXB24/PgnJ m 5963790.75 1949533.3811 9925719.2594 2001862.2406
BALB/cJ m 2448406.2 1591787.3401 5683307.2818 0.0
BXA16/PgnJ m 1872586.2 1949533.3811 5834514.7094 0.0
BXD19/TyJ m 2524398.4 1949533.3811 6486326.9094 0.0
BXD28/TyJ m 1187748.1 1949533.3811 5149676.6094 0.0
BXH4/TyJ m 6572058.25 1949533.3811 10533986.7594 2610129.7406
C3H/HeJ m 3175322.65 1949533.3811 7137251.1594 0.0
C57BL/6J m 849650.54 1232993.1718 3355394.1433 0.0
CXB11/HiAJ m 1633919.8 1949533.3811 5595848.3094 0.0
CXB12/HiAJ m 1361427.45 1949533.3811 5323355.9594 0.0
CXB13/HiAJ m 5083775.6 1591787.3401 8318676.6818 1848874.5182
CXB1/ByJ m 6864426.4333 1591787.3401 10099327.5152 3629525.3515
CXB2/ByJ m 922757.9667 1591787.3401 4157659.0485 0.0
CXB3/ByJ m 1986745.15 1949533.3811 5948673.6594 0.0
CXB4/ByJ m 2299947.55 1949533.3811 6261876.0594 0.0
CXB6/ByJ m 1228450.6333 1591787.3401 4463351.7152 0.0
CXB7/ByJ m 2500347.7 1949533.3811 6462276.2094 0.0
CXB8/HiAJ m 3270693.7333 1591787.3401 6505594.8152 35792.6515
CXB9/HiAJ m 925639.8667 1591787.3401 4160540.9485 0.0
DBA/2J m 3290653.525 1378528.2739 6092160.0406 489147.0094




  GWAS USING LINEAR MIXED MODELS