Project measure / variable:   HMDPpheno8   choline

ID, description, units MPD:50343   choline   choline (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - choline (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means4100081   None
Median of the strain means4036608   None
SD of the strain means± 779455
Coefficient of variation (CV)0.190
Min–max range of strain means2304404   –   6387348   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 29213157829090.2 1391102753766.2 3.1391 0.0015
Residuals 34 15066981598741.3 443146517610.039


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 6387348.0 0.0   1   0.0 0.0 6387348.0, 6387348.0 2.93
A/J m 4048462.0 144556.0   2   102217.0 0.0357 3946245.0, 4150678.0 -0.07
AKR/J m 5393848.0 0.0   1   0.0 0.0 5393848.0, 5393848.0 1.66
AXB10/PgnJ m 3766536.0 0.0   1   0.0 0.0 3766536.0, 3766536.0 -0.43
AXB12/PgnJ m 3575452.0 0.0   1   0.0 0.0 3575452.0, 3575452.0 -0.67
AXB13/PgnJ m 3310564.0 0.0   1   0.0 0.0 3310564.0, 3310564.0 -1.01
AXB15/PgnJ m 3494079.0 0.0   1   0.0 0.0 3494079.0, 3494079.0 -0.78
AXB19a/PgnJ m 3336396.0 0.0   1   0.0 0.0 3336396.0, 3336396.0 -0.98
AXB19b/PgnJ m 3534431.0 632227.0   2   447052.0 0.179 3087378.0, 3981483.0 -0.73
AXB19/PgnJ m 2901863.0 0.0   1   0.0 0.0 2901863.0, 2901863.0 -1.54
AXB1/PgnJ m 2548356.0 0.0   1   0.0 0.0 2548356.0, 2548356.0 -1.99
AXB23/PgnJ m 3221268.0 0.0   1   0.0 0.0 3221268.0, 3221268.0 -1.13
AXB24/PgnJ m 4038893.0 59519.0   2   42087.0 0.0147 3996807.0, 4080980.0 -0.08
AXB2/PgnJ m 5362249.0 0.0   1   0.0 0.0 5362249.0, 5362249.0 1.62
AXB4/PgnJ m 3097087.0 0.0   1   0.0 0.0 3097087.0, 3097087.0 -1.29
AXB5/PgnJ m 3984396.0 0.0   1   0.0 0.0 3984396.0, 3984396.0 -0.15
AXB6/PgnJ m 3545308.0 0.0   1   0.0 0.0 3545308.0, 3545308.0 -0.71
AXB8/PgnJ m 5043416.0 0.0   1   0.0 0.0 5043416.0, 5043416.0 1.21
BALB/cJ m 4298648.0 602019.0   3 347576.0 0.14 3604135.0, 4671721.0 0.25
BTBR T+ Itpr3tf/J m 4374136.0 0.0   1   0.0 0.0 4374136.0, 4374136.0 0.35
BUB/BnJ m 4829810.0 0.0   1   0.0 0.0 4829810.0, 4829810.0 0.94
BXA11/PgnJ m 4050649.0 0.0   1   0.0 0.0 4050649.0, 4050649.0 -0.06
BXA12/PgnJ m 4416128.0 0.0   1   0.0 0.0 4416128.0, 4416128.0 0.41
BXA13/PgnJ m 2662756.0 0.0   1   0.0 0.0 2662756.0, 2662756.0 -1.84
BXA14/PgnJ m 4534427.0 0.0   1   0.0 0.0 4534427.0, 4534427.0 0.56
BXA16/PgnJ m 4154725.0 159062.0   2   112474.0 0.0383 4042251.0, 4267198.0 0.07
BXA1/PgnJ m 4034324.0 0.0   1   0.0 0.0 4034324.0, 4034324.0 -0.08
BXA24/PgnJ m 4777337.0 0.0   1   0.0 0.0 4777337.0, 4777337.0 0.87
BXA25/PgnJ m 3611218.0 0.0   1   0.0 0.0 3611218.0, 3611218.0 -0.63
BXA26/PgnJ m 4491123.0 0.0   1   0.0 0.0 4491123.0, 4491123.0 0.5
BXA2/PgnJ m 4297832.0 0.0   1   0.0 0.0 4297832.0, 4297832.0 0.25
BXA4/PgnJ m 3955567.0 0.0   1   0.0 0.0 3955567.0, 3955567.0 -0.19
BXA7/PgnJ m 5167284.0 0.0   1   0.0 0.0 5167284.0, 5167284.0 1.37
BXA8/PgnJ m 4666710.0 0.0   1   0.0 0.0 4666710.0, 4666710.0 0.73
BXD11/TyJ m 3883567.0 0.0   1   0.0 0.0 3883567.0, 3883567.0 -0.28
BXD12/TyJ m 3652011.0 0.0   1   0.0 0.0 3652011.0, 3652011.0 -0.57
BXD13/TyJ m 4397208.0 0.0   1   0.0 0.0 4397208.0, 4397208.0 0.38
BXD14/TyJ m 3606936.0 0.0   1   0.0 0.0 3606936.0, 3606936.0 -0.63
BXD15/TyJ m 3869276.0 0.0   1   0.0 0.0 3869276.0, 3869276.0 -0.3
BXD18/TyJ m 5254912.0 0.0   1   0.0 0.0 5254912.0, 5254912.0 1.48
BXD19/TyJ m 3856577.0 363213.0   2   256830.0 0.0942 3599746.0, 4113407.0 -0.31
BXD1/TyJ m 3121872.0 0.0   1   0.0 0.0 3121872.0, 3121872.0 -1.25
BXD20/TyJ m 2667565.0 0.0   1   0.0 0.0 2667565.0, 2667565.0 -1.84
BXD21/TyJ m 5081878.0 0.0   1   0.0 0.0 5081878.0, 5081878.0 1.26
BXD22/TyJ m 3594023.0 0.0   1   0.0 0.0 3594023.0, 3594023.0 -0.65
BXD24/TyJ m 4378842.0 0.0   1   0.0 0.0 4378842.0, 4378842.0 0.36
BXD24/TyJ-Cep290rd16/J m 3968098.0 0.0   1   0.0 0.0 3968098.0, 3968098.0 -0.17
BXD28/TyJ m 4563659.0 551766.0   2   390157.0 0.121 4173501.0, 4953816.0 0.59
BXD29-Tlr4lps-2J/J m 3029022.0 0.0   1   0.0 0.0 3029022.0, 3029022.0 -1.37
BXD2/TyJ m 3712624.0 0.0   1   0.0 0.0 3712624.0, 3712624.0 -0.5
BXD32/TyJ m 3974872.0 0.0   1   0.0 0.0 3974872.0, 3974872.0 -0.16
BXD33/TyJ m 3237892.0 0.0   1   0.0 0.0 3237892.0, 3237892.0 -1.11
BXD34/TyJ m 4430582.0 0.0   1   0.0 0.0 4430582.0, 4430582.0 0.42
BXD36/TyJ m 3858909.0 0.0   1   0.0 0.0 3858909.0, 3858909.0 -0.31
BXD38/TyJ m 4135786.0 0.0   1   0.0 0.0 4135786.0, 4135786.0 0.05
BXD39/TyJ m 3918690.0 0.0   1   0.0 0.0 3918690.0, 3918690.0 -0.23
BXD40/TyJ m 4262589.0 0.0   1   0.0 0.0 4262589.0, 4262589.0 0.21
BXD42/TyJ m 3976324.0 0.0   1   0.0 0.0 3976324.0, 3976324.0 -0.16
BXD5/TyJ m 4640442.0 0.0   1   0.0 0.0 4640442.0, 4640442.0 0.69
BXD6/TyJ m 4008705.0 0.0   1   0.0 0.0 4008705.0, 4008705.0 -0.12
BXD8/TyJ m 3494589.0 0.0   1   0.0 0.0 3494589.0, 3494589.0 -0.78
BXD9/TyJ m 4387876.0 0.0   1   0.0 0.0 4387876.0, 4387876.0 0.37
BXH10/TyJ m 3208344.0 0.0   1   0.0 0.0 3208344.0, 3208344.0 -1.14
BXH19/TyJ m 4103803.0 0.0   1   0.0 0.0 4103803.0, 4103803.0 0.0
BXH20/KccJ m 3298239.0 0.0   1   0.0 0.0 3298239.0, 3298239.0 -1.03
BXH22/KccJ m 4514239.0 0.0   1   0.0 0.0 4514239.0, 4514239.0 0.53
BXH2/TyJ m 2515449.0 0.0   1   0.0 0.0 2515449.0, 2515449.0 -2.03
BXH4/TyJ m 5094463.0 1569249.0   2   1109627.0 0.308 3984836.0, 6204090.0 1.28
BXH6/TyJ m 4961284.0 0.0   1   0.0 0.0 4961284.0, 4961284.0 1.1
BXH7/TyJ m 3273204.0 0.0   1   0.0 0.0 3273204.0, 3273204.0 -1.06
BXH8/TyJ m 4299096.0 0.0   1   0.0 0.0 4299096.0, 4299096.0 0.26
BXH9/TyJ m 3423491.0 0.0   1   0.0 0.0 3423491.0, 3423491.0 -0.87
C3H/HeJ m 3670345.0 39502.0   2   27932.0 0.0108 3642412.0, 3698277.0 -0.55
C57BL/6J m 4332326.0 355200.0   5 158850.0 0.082 3935875.0, 4654081.0 0.3
C57L/J m 3568319.0 0.0   1   0.0 0.0 3568319.0, 3568319.0 -0.68
C58/J m 3321632.0 0.0   1   0.0 0.0 3321632.0, 3321632.0 -1.0
CAST/EiJ m 4305626.0 0.0   1   0.0 0.0 4305626.0, 4305626.0 0.26
CBA/J m 3392354.0 0.0   1   0.0 0.0 3392354.0, 3392354.0 -0.91
CE/J m 5036645.0 0.0   1   0.0 0.0 5036645.0, 5036645.0 1.2
CXB11/HiAJ m 3990306.0 215797.0   2   152592.0 0.0541 3837714.0, 4142898.0 -0.14
CXB12/HiAJ m 5087436.0 329438.0   2   232948.0 0.0648 4854488.0, 5320383.0 1.27
CXB13/HiAJ m 4991432.0 832425.0   3 480601.0 0.167 4030372.0, 5486274.0 1.14
CXB1/ByJ m 4714702.0 555130.0   3 320504.0 0.118 4141074.0, 5249270.0 0.79
CXB2/ByJ m 5456500.0 970115.0   3 560096.0 0.178 4702324.0, 6550900.0 1.74
CXB3/ByJ m 4904006.0 527044.0   2   372676.0 0.107 4531330.0, 5276682.0 1.03
CXB4/ByJ m 4748302.0 254049.0   2   179640.0 0.0535 4568662.0, 4927942.0 0.83
CXB6/ByJ m 5587973.0 663190.0   3 382893.0 0.119 4842975.0, 6113947.0 1.91
CXB7/ByJ m 4823270.0 996420.0   2   704575.0 0.207 4118695.0, 5527846.0 0.93
CXB8/HiAJ m 5871455.0 1071118.0   3 618410.0 0.182 4637406.0, 6560152.0 2.27
CXB9/HiAJ m 5707329.0 636233.0   3 367329.0 0.111 5178228.0, 6413276.0 2.06
DBA/2J m 3411023.0 613462.0   4 306731.0 0.18 2875104.0, 4244111.0 -0.88
FVB/NJ m 4710447.0 0.0   1   0.0 0.0 4710447.0, 4710447.0 0.78
I/LnJ m 2304404.0 0.0   1   0.0 0.0 2304404.0, 2304404.0 -2.3
KK/HlJ m 3719128.0 0.0   1   0.0 0.0 3719128.0, 3719128.0 -0.49
LG/J m 3388578.0 0.0   1   0.0 0.0 3388578.0, 3388578.0 -0.91
LP/J m 3797576.0 0.0   1   0.0 0.0 3797576.0, 3797576.0 -0.39
MA/MyJ m 4450166.0 0.0   1   0.0 0.0 4450166.0, 4450166.0 0.45
NOD/ShiLtJ m 4447890.0 0.0   1   0.0 0.0 4447890.0, 4447890.0 0.45
NON/ShiLtJ m 4777010.0 0.0   1   0.0 0.0 4777010.0, 4777010.0 0.87
NZW/LacJ m 4255195.0 0.0   1   0.0 0.0 4255195.0, 4255195.0 0.2
PL/J m 3681616.0 0.0   1   0.0 0.0 3681616.0, 3681616.0 -0.54
RIIIS/J m 3667676.0 0.0   1   0.0 0.0 3667676.0, 3667676.0 -0.55
SEA/GnJ m 4245776.0 0.0   1   0.0 0.0 4245776.0, 4245776.0 0.19
SJL/J m 3048986.0 0.0   1   0.0 0.0 3048986.0, 3048986.0 -1.35
SM/J m 3619909.0 0.0   1   0.0 0.0 3619909.0, 3619909.0 -0.62
SWR/J m 5003720.0 0.0   1   0.0 0.0 5003720.0, 5003720.0 1.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 4048461.65 470715.6879 5005071.0221 3091852.2779
AXB19b/PgnJ m 3534430.65 470715.6879 4491040.0221 2577821.2779
AXB24/PgnJ m 4038893.4 470715.6879 4995502.7721 3082284.0279
BALB/cJ m 4298647.6 384337.7497 5079715.8816 3517579.3184
BXA16/PgnJ m 4154724.9 470715.6879 5111334.2721 3198115.5279
BXD19/TyJ m 3856576.55 470715.6879 4813185.9221 2899967.1779
BXD28/TyJ m 4563658.65 470715.6879 5520268.0221 3607049.2779
BXH4/TyJ m 5094462.9 470715.6879 6051072.2721 4137853.5279
C3H/HeJ m 3670344.55 470715.6879 4626953.9221 2713735.1779
C57BL/6J m 4332326.02 297706.7408 4937338.9094 3727313.1306
CXB11/HiAJ m 3990305.9 470715.6879 4946915.2721 3033696.5279
CXB12/HiAJ m 5087435.5 470715.6879 6044044.8721 4130826.1279
CXB13/HiAJ m 4991431.7667 384337.7497 5772500.0483 4210363.485
CXB1/ByJ m 4714702.2667 384337.7497 5495770.5483 3933633.985
CXB2/ByJ m 5456499.8333 384337.7497 6237568.115 4675431.5517
CXB3/ByJ m 4904006.25 470715.6879 5860615.6221 3947396.8779
CXB4/ByJ m 4748302.0 470715.6879 5704911.3721 3791692.6279
CXB6/ByJ m 5587973.3333 384337.7497 6369041.615 4806905.0517
CXB7/ByJ m 4823270.4 470715.6879 5779879.7721 3866661.0279
CXB8/HiAJ m 5871455.1667 384337.7497 6652523.4483 5090386.885
CXB9/HiAJ m 5707328.6667 384337.7497 6488396.9483 4926260.385
DBA/2J m 3411022.65 332846.2549 4087447.624 2734597.676




  GWAS USING LINEAR MIXED MODELS