Project measure / variable:   Rice1   Dsc2

ID, description, units MPD:49209   Dsc2   DSC2, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - DSC2, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means12.1   None 9.45   None
Median of the strain means12.5   None 11.0   None
SD of the strain means± 7.12 ± 6.57
Coefficient of variation (CV)0.589 0.695
Min–max range of strain means0   –   22.0   None 0   –   20.5   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 76.4545 76.4545 12.4593 0.0019
strain 10 1669.7273 166.9727 27.2104 < 0.0001
sex:strain 10 208.5455 20.8545 3.3985 0.008
Residuals 22 135.0 6.1364


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 14.0 0.0   2   0.0 0.0 14.0, 14.0 0.27
C3H/HeJ m 10.0 2.83   2   2.0 0.283 8.0, 12.0 0.08
C57BL/6J f 18.5 0.707   2   0.5 0.0382 18.0, 19.0 0.9
C57BL/6J m 20.5 0.707   2   0.5 0.0345 20.0, 21.0 1.68
CAST/EiJ f 22.0 4.24   2   3.0 0.193 19.0, 25.0 1.39
CAST/EiJ m 16.5 0.707   2   0.5 0.0429 16.0, 17.0 1.07
DBA/1J f 11.5 3.54   2   2.5 0.307 9.0, 14.0 -0.08
DBA/1J m 11.0 0.0   2   0.0 0.0 11.0, 11.0 0.24
MRL/MpJ f 14.0 4.24   2   3.0 0.303 11.0, 17.0 0.27
MRL/MpJ m 8.0 1.41   2   1.0 0.177 7.0, 9.0 -0.22
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 0.0   2   0.0 0.0 -1.7
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 0.0   2   0.0 0.0 -1.44
NOD/ShiLtJ f 12.5 2.12   2   1.5 0.17 11.0, 14.0 0.06
NOD/ShiLtJ m 12.5 0.707   2   0.5 0.0566 12.0, 13.0 0.46
NZW/LacJ f 12.5 2.12   2   1.5 0.17 11.0, 14.0 0.06
NZW/LacJ m 2.0 2.83   2   2.0 1.41 -1.13
SB/LeJ f 0.0 0.0   2   0.0 0.0 -1.7
SB/LeJ m 0.0 0.0   2   0.0 0.0 -1.44
STOCK a/a Tmem79ma Flgft/J f 19.5 6.36   2   4.5 0.326 15.0, 24.0 1.04
STOCK a/a Tmem79ma Flgft/J m 11.0 2.83   2   2.0 0.257 9.0, 13.0 0.24
WSB/EiJ f 8.5 2.12   2   1.5 0.25 7.0, 10.0 -0.5
WSB/EiJ m 12.5 2.12   2   1.5 0.17 11.0, 14.0 0.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 14.0 1.7516 17.6326 10.3674
C3H/HeJ m 10.0 1.7516 13.6326 6.3674
C57BL/6J f 18.5 1.7516 22.1326 14.8674
C57BL/6J m 20.5 1.7516 24.1326 16.8674
CAST/EiJ f 22.0 1.7516 25.6326 18.3674
CAST/EiJ m 16.5 1.7516 20.1326 12.8674
DBA/1J f 11.5 1.7516 15.1326 7.8674
DBA/1J m 11.0 1.7516 14.6326 7.3674
MRL/MpJ f 14.0 1.7516 17.6326 10.3674
MRL/MpJ m 8.0 1.7516 11.6326 4.3674
MRL/MpJ Faslpr-Foxq1sa-J/J f 0.0 1.7516 3.6326 -3.6326
MRL/MpJ Faslpr-Foxq1sa-J/J m 0.0 1.7516 3.6326 -3.6326
NOD/ShiLtJ f 12.5 1.7516 16.1326 8.8674
NOD/ShiLtJ m 12.5 1.7516 16.1326 8.8674
NZW/LacJ f 12.5 1.7516 16.1326 8.8674
NZW/LacJ m 2.0 1.7516 5.6326 -1.6326
SB/LeJ f 0.0 1.7516 3.6326 -3.6326
SB/LeJ m 0.0 1.7516 3.6326 -3.6326
STOCK a/a Tmem79ma Flgft/J f 19.5 1.7516 23.1326 15.8674
STOCK a/a Tmem79ma Flgft/J m 11.0 1.7516 14.6326 7.3674
WSB/EiJ f 8.5 1.7516 12.1326 4.8674
WSB/EiJ m 12.5 1.7516 16.1326 8.8674


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 12.0 1.2386 14.5687 9.4313
C57BL/6J both 19.5 1.2386 22.0687 16.9313
CAST/EiJ both 19.25 1.2386 21.8187 16.6813
DBA/1J both 11.25 1.2386 13.8187 8.6813
MRL/MpJ both 11.0 1.2386 13.5687 8.4313
MRL/MpJ Faslpr-Foxq1sa-J/J both 0.0 1.2386 2.5687 -2.5687
NOD/ShiLtJ both 12.5 1.2386 15.0687 9.9313
NZW/LacJ both 7.25 1.2386 9.8187 4.6813
SB/LeJ both 0.0 1.2386 2.5687 -2.5687
STOCK a/a Tmem79ma Flgft/J both 15.25 1.2386 17.8187 12.6813
WSB/EiJ both 10.5 1.2386 13.0687 7.9313




  GWAS USING LINEAR MIXED MODELS