Rice1: Using hair proteomics to distinguish 11 strains of mice (2012)

Rice RH, Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS, Sundberg JP. Differentiating inbred mouse strains from each other and those with single gene mutations using hair proteomics. PLoS One. 2012;7(12):e51956. doi: 10.1371/journal.pone.0051956. Epub 2012 Dec 14.   PubMed 23251662     FullText


       
Rice1 downloads
• Download Rice1 project data set     one row per animal, one column per trait
• Download Rice1 strain means, SD, N, etc.     one row per strain/sex/measure
Participants Robert H Rice       University of California, Davis Davis, CA
John P Sundberg       The Jackson Laboratory Bar Harbor, ME
With: Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS
ContactRobert H Rice     rhrice@ucdavis.edu     Lab web site
AcknowledgementsFunding provided by NIH AR047204, AR056635, ES04699; North American Hair Research Society
Project type Phenotype strain survey data set
MPD identifiersRice1     MPD:492
Data changelog No updates/corrections.       Initial release date: 12/2013.
Formatted citation
Click above to copy-paste the entire citation for this MPD web page.
Summary of procedures that were conducted
• proteomic profiling Hair proteomics analysis. Spectral counts for 46 specific proteins.
Mice: inbred   11 strains   ♀♂   age 10-19wks   1 cohort

Select table page: First Prev Next Last
Data set MPD ID Procedure / Protocol Drug or Challenge Phenotype Measure Panel No. of Strains Sex Age Sample Size (Avg)
    Rice1 49201 proteomic profiling (none) 2310061N02Rik protein, spectral counts  2310061N02Rik inbred 11 both 10-19wks N=2
    Rice1 49202 proteomic profiling (none) ACGT1, spectral counts  Actg1 inbred 11 both 10-19wks N=2
    Rice1 49203 proteomic profiling (none) ADH6B, spectral counts  Adh6b inbred 11 both 10-19wks N=2
    Rice1 49204 proteomic profiling (none) ASS1, spectral counts  Ass1 inbred 11 both 10-19wks N=2
    Rice1 49205 proteomic profiling (none) CAPN12, spectral counts  Capn12 inbred 11 both 10-19wks N=2
    Rice1 49206 proteomic profiling (none) CDSN, spectral counts  Cdsn inbred 11 both 10-19wks N=2
    Rice1 49207 proteomic profiling (none) CRISP1, spectral counts  Crisp1 inbred 11 both 10-19wks N=2
    Rice1 49208 proteomic profiling (none) CTSB, spectral counts  Ctsb inbred 11 both 10-19wks N=2
    Rice1 49209 proteomic profiling (none) DSC2, spectral counts  Dsc2 inbred 11 both 10-19wks N=2
    Rice1 49210 proteomic profiling (none) DUSP14, spectral counts  Dusp14 inbred 11 both 10-19wks N=2
    Rice1 49211 proteomic profiling (none) EEF1A1, spectral counts  Eef1a1 inbred 11 both 10-19wks N=2
    Rice1 49212 proteomic profiling (none) FABP4, spectral counts  Fabp4 inbred 11 both 10-19wks N=2
    Rice1 49213 proteomic profiling (none) FABP5, spectral counts  Fabp5 inbred 11 both 10-19wks N=2
    Rice1 49214 proteomic profiling (none) Gm11568, spectral counts  Gm11568 inbred 11 both 10-19wks N=2
    Rice1 49217 proteomic profiling (none) HIST1H2BP, spectral counts  Hist1h2bp inbred 11 both 10-19wks N=2
    Rice1 49218 proteomic profiling (none) HIST1H4A, spectral counts  Hist1h4a inbred 11 both 10-19wks N=2
    Rice1 49219 proteomic profiling (none) KRT16, spectral counts  Krt16 inbred 11 both 10-19wks N=2
    Rice1 49220 proteomic profiling (none) KRT17, spectral counts  Krt17 inbred 11 both 10-19wks N=2
    Rice1 49221 proteomic profiling (none) KRT31, spectral counts  Krt31 inbred 11 both 10-19wks N=2
    Rice1 49222 proteomic profiling (none) KRT32, spectral counts  Krt32 inbred 11 both 10-19wks N=2
    Rice1 49223 proteomic profiling (none) KRT75, spectral counts  Krt75 inbred 11 both 10-19wks N=2
    Rice1 49224 proteomic profiling (none) KRT81, spectral counts  Krt81 inbred 11 both 10-19wks N=2
    Rice1 49225 proteomic profiling (none) KRT82, spectral counts  Krt82 inbred 11 both 10-19wks N=2
    Rice1 49226 proteomic profiling (none) KRT83, spectral counts  Krt83 inbred 11 both 10-19wks N=2
    Rice1 49227 proteomic profiling (none) KRT84, spectral counts  Krt84 inbred 11 both 10-19wks N=2
    Rice1 49228 proteomic profiling (none) KRTAP3-2, spectral counts  Krtap3_2 inbred 11 both 10-19wks N=2
    Rice1 49229 proteomic profiling (none) KRTAP4-6, spectral counts  Krtap4_6 inbred 11 both 10-19wks N=2
    Rice1 49230 proteomic profiling (none) KRTAP6-2, spectral counts  Krtap6_2 inbred 11 both 10-19wks N=2
    Rice1 49231 proteomic profiling (none) KRTAP11-1, spectral counts  Krtap11_1 inbred 11 both 10-19wks N=2
    Rice1 49232 proteomic profiling (none) KRTAP13-1, spectral counts  Krtap13_1 inbred 11 both 10-19wks N=2
    Rice1 49233 proteomic profiling (none) KRTAP14, spectral counts  Krtap14 inbred 11 both 10-19wks N=2
    Rice1 49234 proteomic profiling (none) KRTAP15, spectral counts  Krtap15 inbred 11 both 10-19wks N=2
    Rice1 49235 proteomic profiling (none) KRTAP16-1, spectral counts  Krtap16_1 inbred 11 both 10-19wks N=2
    Rice1 49236 proteomic profiling (none) KRTAP19-1, spectral counts  Krtap19_1 inbred 11 both 10-19wks N=2
    Rice1 49237 proteomic profiling (none) KRTAP19-3, spectral counts  Krtap19_3 inbred 11 both 10-19wks N=2
    Rice1 49238 proteomic profiling (none) KRTAP19-4, spectral counts  Krtap19_4 inbred 11 both 10-19wks N=2
    Rice1 49239 proteomic profiling (none) KRTAP19-5), spectral counts  Krtap19_5 inbred 11 both 10-19wks N=2
    Rice1 49240 proteomic profiling (none) LGALS7, spectral counts  Lgals7 inbred 11 both 10-19wks N=2
    Rice1 49241 proteomic profiling (none) ME1, spectral counts  Me1 inbred 11 both 10-19wks N=2
    Rice1 49242 proteomic profiling (none) MLF1, spectral counts  Mlf1 inbred 11 both 10-19wks N=2
    Rice1 49243 proteomic profiling (none) PKP1, spectral counts  Pkp1 inbred 11 both 10-19wks N=2
    Rice1 49244 proteomic profiling (none) S100A3, spectral counts  S100a3 inbred 11 both 10-19wks N=2
    Rice1 49245 proteomic profiling (none) SFN, spectral counts  Sfn inbred 11 both 10-19wks N=2
    Rice1 49246 proteomic profiling (none) TCHHL1, spectral counts  Tchhl1 inbred 11 both 10-19wks N=2
    Rice1 49247 proteomic profiling (none) TUBB2A, spectral counts  Tubb2a inbred 11 both 10-19wks N=2
    Rice1 49248 proteomic profiling (none) VSIG8, spectral counts  Vsig8 inbred 11 both 10-19wks N=2
    All boxes             To see more rows use the paging control at top.