Project measure / variable:   Chesler4   OF_corner_pct

ID, description, units MPD:47003   OF_corner_pct   percentage of time in corners, 20 min test   [%]  
Data set, strains Chesler4   DO population w/par   9 strains     sex: both     age: 12-16wks
Procedure open field test
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means15.6   % 13.7   %
Median of the strain means9.52   % 10.3   %
SD of the strain means± 13.8 ± 13.2
Coefficient of variation (CV)0.881 0.969
Min–max range of strain means4.35   –   48.0   % 4.21   –   46.4   %
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 414.7056 414.7056 2.4969 0.1149
strain 8 121638.6596 15204.8324 91.5471 < 0.0001
sex:strain 8 703.629 87.9536 0.5296 0.8343
Residuals 393 65272.3751 166.0875


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.9 12.9   8 4.56 1.18 0.44, 31.2 -0.34
129S1/SvImJ m 4.21 7.3   8 2.58 1.74 1.02, 22.2 -0.71
A/J f 26.9 24.1   8 8.51 0.893 0.82
A/J m 18.4 19.5   8 6.9 1.06 0.27, 54.2 0.36
C57BL/6J f 4.35 1.23   8 0.437 0.284 2.76, 6.32 -0.82
C57BL/6J m 5.07 2.08   8 0.735 0.411 2.06, 8.05 -0.65
CAST/EiJ f 9.06 4.55   8 1.61 0.502 3.59, 17.5 -0.48
CAST/EiJ m 10.9 5.13   8 1.81 0.471 2.0, 16.9 -0.21
J:DO f 48.0 15.3   144 1.27 0.319 7.63, 93.9 2.35
J:DO m 46.4 12.4   139 1.05 0.268 16.1, 89.7 2.47
NOD/ShiLtJ f 7.39 4.42   8 1.56 0.598 1.83, 14.1 -0.6
NOD/ShiLtJ m 7.18 4.16   8 1.47 0.58 2.82, 15.4 -0.49
NZO/HlLtJ f 9.26 5.13   8 1.81 0.554 3.27, 17.4 -0.46
NZO/HlLtJ m 4.68 4.46   8 1.58 0.952 0.93, 14.8 -0.68
PWK/PhJ f 9.52 4.49   8 1.59 0.472 1.67, 14.6 -0.44
PWK/PhJ m 15.9 6.25   8 2.21 0.392 5.99, 24.8 0.17
WSB/EiJ f 15.1 9.95   8 3.52 0.658 2.67, 34.3 -0.04
WSB/EiJ m 10.3 4.88   8 1.72 0.475 3.31, 16.9 -0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.8763 4.5564 19.8343 1.9182
129S1/SvImJ m 4.2088 4.5564 13.1668 0.0
A/J f 26.9313 4.5564 35.8893 17.9732
A/J m 18.42 4.5564 27.378 9.462
C57BL/6J f 4.3487 4.5564 13.3068 0.0
C57BL/6J m 5.0662 4.5564 14.0243 0.0
CAST/EiJ f 9.0575 4.5564 18.0155 0.0995
CAST/EiJ m 10.8975 4.5564 19.8555 1.9395
J:DO f 47.9834 1.074 50.0948 45.872
J:DO m 46.3643 1.0931 48.5134 44.2153
NOD/ShiLtJ f 7.3912 4.5564 16.3493 0.0
NOD/ShiLtJ m 7.1775 4.5564 16.1355 0.0
NZO/HlLtJ f 9.2575 4.5564 18.2155 0.2995
NZO/HlLtJ m 4.685 4.5564 13.643 0.0
PWK/PhJ f 9.515 4.5564 18.473 0.557
PWK/PhJ m 15.935 4.5564 24.893 6.977
WSB/EiJ f 15.1162 4.5564 24.0743 6.1582
WSB/EiJ m 10.2575 4.5564 19.2155 1.2995


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.5425 3.2219 13.8768 1.2082
A/J both 22.6756 3.2219 29.0099 16.3414
C57BL/6J both 4.7075 3.2219 11.0418 0.0
CAST/EiJ both 9.9775 3.2219 16.3118 3.6432
J:DO both 47.1739 0.7662 48.6802 45.6675
NOD/ShiLtJ both 7.2844 3.2219 13.6186 0.9501
NZO/HlLtJ both 6.9712 3.2219 13.3055 0.637
PWK/PhJ both 12.725 3.2219 19.0593 6.3907
WSB/EiJ both 12.6869 3.2219 19.0211 6.3526




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA