Project measure / variable:   Jentsch1   revers_latency_correct

ID, description, units MPD:40311   revers_latency_correct   average latency to make correct choice, reversal phase   [s]  
Data set, strains Jentsch1   BXD w/par   53 strains     sex: m     age: 17wks
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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Jentsch1 - average latency to make correct choice, reversal phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested53 strains
Mean of the strain means5.28   s
Median of the strain means5.25   s
SD of the strain means± 1.48
Coefficient of variation (CV)0.281
Min–max range of strain means2.42   –   8.20   s
Mean sample size per strain3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 52 335.2609 6.4473 1.5576 0.0243
Residuals 123 509.1207 4.1392


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ m 5.24 2.15   5 0.961 0.41 3.2, 8.2 -0.03
BXD102/RwwJ m 2.42 0.847   5 0.379 0.35 1.4, 3.3 -1.93
BXD12/TyJ m 3.95 3.04   2   2.15 0.77 1.8, 6.1 -0.9
BXD13/TyJ m 4.55 2.33   2   1.65 0.513 2.9, 6.2 -0.49
BXD14/TyJ m 3.45 1.48   2   1.05 0.43 2.4, 4.5 -1.23
BXD16/TyJ m 3.65 0.212   2   0.15 0.0581 3.5, 3.8 -1.1
BXD18/TyJ m 5.45 2.33   2   1.65 0.428 3.8, 7.1 0.11
BXD1/TyJ m 6.58 1.41   5 0.63 0.214 5.3, 8.6 0.88
BXD22/TyJ m 5.95 3.46   2   2.45 0.582 3.5, 8.4 0.45
BXD24/TyJ m 6.02 1.36   5 0.609 0.226 4.5, 7.9 0.5
BXD25/TyJ m 6.2 0.0   2   0.0 0.0 6.2, 6.2 0.62
BXD29-Tlr4lps-2J/J m 8.2 0.849   2   0.6 0.103 7.6, 8.8 1.97
BXD2/TyJ m 5.4 2.4   2   1.7 0.445 3.7, 7.1 0.08
BXD31/TyJ m 7.38 1.88   4 0.941 0.255 5.7, 9.7 1.41
BXD32/TyJ m 5.7 1.44   4 0.722 0.253 4.2, 7.6 0.28
BXD34/TyJ m 5.55 2.51   6 1.02 0.452 2.6, 9.3 0.18
BXD36/TyJ m 4.15 3.46   2   2.45 0.835 1.7, 6.6 -0.76
BXD38/TyJ m 3.23 1.63   4 0.814 0.505 1.1, 4.5 -1.38
BXD39/TyJ m 5.97 1.9   3 1.1 0.319 4.1, 7.9 0.46
BXD40/TyJ m 3.38 1.16   5 0.517 0.342 2.3, 5.3 -1.28
BXD42/TyJ m 6.34 2.05   5 0.917 0.323 3.7, 8.8 0.71
BXD43/RwwJ m 4.43 3.41   4 1.71 0.772 1.0, 8.8 -0.57
BXD44/RwwJ m 5.25 1.91   2   1.35 0.364 3.9, 6.6 -0.02
BXD45/RwwJ m 8.15 1.77   2   1.25 0.217 6.9, 9.4 1.93
BXD48a/RwwJ m 3.73 2.67   4 1.34 0.717 1.2, 7.4 -1.05
BXD49/RwwJ m 4.0 1.7   2   1.2 0.424 2.8, 5.2 -0.86
BXD50/RwwJ m 6.08 2.8   4 1.4 0.461 3.6, 8.5 0.54
BXD51/RwwJ m 4.53 0.321   3 0.186 0.0709 4.3, 4.9 -0.51
BXD55/RwwJ m 3.37 0.551   3 0.318 0.164 3.0, 4.0 -1.29
BXD56/RwwJ m 7.8 2.97   2   2.1 0.381 5.7, 9.9 1.7
BXD60/RwwJ m 5.65 0.778   2   0.55 0.138 5.1, 6.2 0.25
BXD61/RwwJ m 7.3 0.265   3 0.153 0.0362 7.1, 7.6 1.36
BXD62/RwwJ m 6.1 1.41   5 0.63 0.231 5.2, 8.6 0.55
BXD65/RwwJ m 6.7 2.97   2   2.1 0.443 4.6, 8.8 0.96
BXD66/RwwJ m 3.95 1.2   2   0.85 0.304 3.1, 4.8 -0.9
BXD68/RwwJ m 4.38 1.37   6 0.558 0.312 2.9, 6.3 -0.61
BXD70/RwwJ m 7.93 0.808   3 0.467 0.102 7.0, 8.4 1.79
BXD71/RwwJ m 4.8 1.25   4 0.626 0.261 3.7, 6.6 -0.32
BXD73a/RwwJ m 5.1 1.61   5 0.719 0.315 3.8, 7.9 -0.12
BXD73b/RwwJ m 4.5 1.39   4 0.695 0.309 2.6, 5.8 -0.53
BXD73/RwwJ m 3.6 0.424   2   0.3 0.118 3.3, 3.9 -1.13
BXD75/RwwJ m 5.48 4.18   5 1.87 0.764 1.2, 12.0 0.13
BXD77/RwwJ m 6.6 2.26   2   1.6 0.343 5.0, 8.2 0.89
BXD83/RwwJ m 5.88 3.68   4 1.84 0.626 2.3, 10.9 0.4
BXD84/RwwJ m 4.4 1.3   3 0.751 0.295 2.9, 5.2 -0.59
BXD85/RwwJ m 6.96 1.2   5 0.538 0.173 5.8, 8.7 1.13
BXD86/RwwJ m 4.57 2.95   4 1.47 0.644 1.4, 8.0 -0.48
BXD89/RwwJ m 6.33 1.91   3 1.1 0.301 4.9, 8.5 0.71
BXD90/RwwJ m 2.65 0.212   2   0.15 0.08 2.5, 2.8 -1.77
BXD95/RwwJ m 3.1 0.283   2   0.2 0.0912 2.9, 3.3 -1.47
BXD98/RwwJ m 7.9 2.4   2   1.7 0.304 6.2, 9.6 1.76
C57BL/6J m 5.12 2.04   5 0.912 0.398 2.7, 8.2 -0.11
DBA/2J m 4.82 1.07   4 0.533 0.221 3.8, 6.2 -0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ m 5.24 0.9099 7.041 3.439
BXD102/RwwJ m 2.42 0.9099 4.221 0.619
BXD12/TyJ m 3.95 1.4386 6.7976 1.1024
BXD13/TyJ m 4.55 1.4386 7.3976 1.7024
BXD14/TyJ m 3.45 1.4386 6.2976 0.6024
BXD16/TyJ m 3.65 1.4386 6.4976 0.8024
BXD18/TyJ m 5.45 1.4386 8.2976 2.6024
BXD1/TyJ m 6.58 0.9099 8.381 4.779
BXD22/TyJ m 5.95 1.4386 8.7976 3.1024
BXD24/TyJ m 6.02 0.9099 7.821 4.219
BXD25/TyJ m 6.2 1.4386 9.0476 3.3524
BXD29-Tlr4lps-2J/J m 8.2 1.4386 11.0476 5.3524
BXD2/TyJ m 5.4 1.4386 8.2476 2.5524
BXD31/TyJ m 7.375 1.0173 9.3886 5.3614
BXD32/TyJ m 5.7 1.0173 7.7136 3.6864
BXD34/TyJ m 5.55 0.8306 7.1941 3.9059
BXD36/TyJ m 4.15 1.4386 6.9976 1.3024
BXD38/TyJ m 3.225 1.0173 5.2386 1.2114
BXD39/TyJ m 5.9667 1.1746 8.2918 3.6416
BXD40/TyJ m 3.38 0.9099 5.181 1.579
BXD42/TyJ m 6.34 0.9099 8.141 4.539
BXD43/RwwJ m 4.425 1.0173 6.4386 2.4114
BXD44/RwwJ m 5.25 1.4386 8.0976 2.4024
BXD45/RwwJ m 8.15 1.4386 10.9976 5.3024
BXD48a/RwwJ m 3.725 1.0173 5.7386 1.7114
BXD49/RwwJ m 4.0 1.4386 6.8476 1.1524
BXD50/RwwJ m 6.075 1.0173 8.0886 4.0614
BXD51/RwwJ m 4.5333 1.1746 6.8584 2.2082
BXD55/RwwJ m 3.3667 1.1746 5.6918 1.0416
BXD56/RwwJ m 7.8 1.4386 10.6476 4.9524
BXD60/RwwJ m 5.65 1.4386 8.4976 2.8024
BXD61/RwwJ m 7.3 1.1746 9.6251 4.9749
BXD62/RwwJ m 6.1 0.9099 7.901 4.299
BXD65/RwwJ m 6.7 1.4386 9.5476 3.8524
BXD66/RwwJ m 3.95 1.4386 6.7976 1.1024
BXD68/RwwJ m 4.3833 0.8306 6.0274 2.7392
BXD70/RwwJ m 7.9333 1.1746 10.2584 5.6082
BXD71/RwwJ m 4.8 1.0173 6.8136 2.7864
BXD73a/RwwJ m 5.1 0.9099 6.901 3.299
BXD73b/RwwJ m 4.5 1.0173 6.5136 2.4864
BXD73/RwwJ m 3.6 1.4386 6.4476 0.7524
BXD75/RwwJ m 5.48 0.9099 7.281 3.679
BXD77/RwwJ m 6.6 1.4386 9.4476 3.7524
BXD83/RwwJ m 5.875 1.0173 7.8886 3.8614
BXD84/RwwJ m 4.4 1.1746 6.7251 2.0749
BXD85/RwwJ m 6.96 0.9099 8.761 5.159
BXD86/RwwJ m 4.575 1.0173 6.5886 2.5614
BXD89/RwwJ m 6.3333 1.1746 8.6584 4.0082
BXD90/RwwJ m 2.65 1.4386 5.4976 0.0
BXD95/RwwJ m 3.1 1.4386 5.9476 0.2524
BXD98/RwwJ m 7.9 1.4386 10.7476 5.0524
C57BL/6J m 5.12 0.9099 6.921 3.319
DBA/2J m 4.825 1.0173 6.8386 2.8114




  GWAS USING LINEAR MIXED MODELS