Project measure / variable:   Crowley1   horizontal_actd30

ID, description, units MPD:39413   horizontal_actd30   distance traveled, 60 min test   [cm]  on day 30  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crowley1 - distance traveled, 60 min test on day 30



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means3482   cm
Median of the strain means2594   cm
SD of the strain means± 3088
Coefficient of variation (CV)0.887
Min–max range of strain means394   –   14180   cm
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 1306511010.2185 50250423.4699 22.5475 < 0.0001
Residuals 132 294181487.2155 2228647.6304


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 781.0 533.0   8 189.0 0.683 62.0, 1517.0 -0.87
A/J m 795.0 330.0   5 147.0 0.415 417.0, 1311.0 -0.87
AKR/J m 2786.0 1245.0   5 557.0 0.447 1367.0, 4701.0 -0.23
BALB/cByJ m 3208.0 2395.0   5 1071.0 0.747 1688.0, 7448.0 -0.09
BTBR T+ Itpr3tf/J m 2025.0 1062.0   8 375.0 0.524 118.0, 3646.0 -0.47
C3H/HeJ m 1158.0 586.0   5 262.0 0.506 677.0, 2130.0 -0.75
C57BL/6J m 2400.0 856.0   5 383.0 0.357 1468.0, 3686.0 -0.35
C57BLKS/J m 1969.0 992.0   5 444.0 0.504 468.0, 2747.0 -0.49
CAST/EiJ m 14180.0 2939.0   5 1315.0 0.207 10127.0, 18028.0 3.46
CBA/J m 2248.0 131.0   5 58.8 0.0585 2037.0, 2391.0 -0.4
DBA/2J m 4912.0 1237.0   9 412.0 0.252 3678.0, 7297.0 0.46
DDY/JclSidSeyFrkJ m 1845.0 1400.0   7 529.0 0.759 55.0, 4402.0 -0.53
FVB/NJ m 6821.0 2131.0   5 953.0 0.312 4150.0, 9472.0 1.08
KK/HlJ m 1015.0 694.0   7 262.0 0.683 437.0, 2483.0 -0.8
MA/MyJ m 4328.0 982.0   6 401.0 0.227 3144.0, 5568.0 0.27
MOLF/EiJ m 2517.0 2548.0   5 1139.0 1.01 215.0, 6602.0 -0.31
MRL/MpJ m 2901.0 503.0   5 225.0 0.173 2391.0, 3567.0 -0.19
MSM/MsJ m 2594.0 3163.0   6 1291.0 1.22 102.0, 8631.0 -0.29
NOD/ShiLtJ m 6756.0 759.0   5 339.0 0.112 6131.0, 7954.0 1.06
NON/ShiLtJ m 3538.0 1895.0   8 670.0 0.536 1030.0, 6828.0 0.02
NZL/LtJ m 1267.0 1018.0   8 360.0 0.804 344.0, 3618.0 -0.72
NZO/HlLtJ m 394.0 122.0   4 61.1 0.31 276.0, 546.0 -1.0
NZW/LacJ m 1030.0 190.0   5 84.9 0.184 766.0, 1199.0 -0.79
PWK/PhJ m 3907.0 959.0   5 429.0 0.245 2797.0, 5407.0 0.14
SJL/J m 3254.0 510.0   5 228.0 0.157 2734.0, 3997.0 -0.07
SM/J m 5025.0 1415.0   8 500.0 0.282 3871.0, 8225.0 0.5
WSB/EiJ m 10369.0 2800.0   5 1252.0 0.27 8020.0, 14573.0 2.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 781.125 527.8077 1825.1808 0.0
A/J m 794.8 667.6298 2115.4377 0.0
AKR/J m 2785.6 667.6298 4106.2377 1464.9623
BALB/cByJ m 3207.6 667.6298 4528.2377 1886.9623
BTBR T+ Itpr3tf/J m 2025.25 527.8077 3069.3058 981.1942
C3H/HeJ m 1158.4 667.6298 2479.0377 0.0
C57BL/6J m 2399.6 667.6298 3720.2377 1078.9623
C57BLKS/J m 1969.2 667.6298 3289.8377 648.5623
CAST/EiJ m 14179.8 667.6298 15500.4377 12859.1623
CBA/J m 2247.6 667.6298 3568.2377 926.9623
DBA/2J m 4912.3333 497.6219 5896.6786 3927.9881
DDY/JclSidSeyFrkJ m 1845.0 564.2502 2961.1426 728.8574
FVB/NJ m 6821.2 667.6298 8141.8377 5500.5623
KK/HlJ m 1014.8571 564.2502 2130.9997 0.0
MA/MyJ m 4328.1667 609.4598 5533.7384 3122.5949
MOLF/EiJ m 2517.2 667.6298 3837.8377 1196.5623
MRL/MpJ m 2901.4 667.6298 4222.0377 1580.7623
MSM/MsJ m 2594.0 609.4598 3799.5718 1388.4282
NOD/ShiLtJ m 6756.0 667.6298 8076.6377 5435.3623
NON/ShiLtJ m 3538.0 527.8077 4582.0558 2493.9442
NZL/LtJ m 1266.875 527.8077 2310.9308 222.8192
NZO/HlLtJ m 394.0 746.4328 1870.5178 0.0
NZW/LacJ m 1030.0 667.6298 2350.6377 0.0
PWK/PhJ m 3907.4 667.6298 5228.0377 2586.7623
SJL/J m 3254.2 667.6298 4574.8377 1933.5623
SM/J m 5025.375 527.8077 6069.4308 3981.3192
WSB/EiJ m 10368.6 667.6298 11689.2377 9047.9623




  GWAS USING LINEAR MIXED MODELS