Project measure / variable:   Donahue2   femur_width_ML

ID, description, units MPD:17215   femur_width_ML   medial to lateral width of right femur, mid-diaphysis   [mm]  
Data set, strains Donahue2   inbred   10 strains     sex: both     age: 16wks
Procedure bone dimensions
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  STRAIN COMPARISON PLOT
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Donahue2 - medial to lateral width of right femur, mid-diaphysis



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1.53   mm 1.71   mm
Median of the strain means1.56   mm 1.75   mm
SD of the strain means± 0.149 ± 0.247
Coefficient of variation (CV)0.0973 0.144
Min–max range of strain means1.30   –   1.73   mm 1.20   –   2.05   mm
Mean sample size per strain10.0   mice 11.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.7869 1.7869 123.4243 < 0.0001
strain 9 7.3166 0.813 56.1529 < 0.0001
sex:strain 9 0.7342 0.0816 5.6347 < 0.0001
Residuals 192 2.7797 0.0145


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.45 0.0917   10 0.029 0.0634 1.22, 1.56 -0.54
129S1/SvImJ m 1.57 0.0808   15 0.0209 0.0514 1.47, 1.74 -0.57
BALB/cJ f 1.73 0.236   10 0.0745 0.137 1.23, 2.03 1.34
BALB/cJ m 2.0 0.204   10 0.0645 0.102 1.73, 2.37 1.17
C3H/HeJ f 1.45 0.074   9 0.0247 0.0509 1.33, 1.54 -0.54
C3H/HeJ m 1.73 0.0919   11 0.0277 0.0532 1.51, 1.85 0.08
C57BL/6J f 1.69 0.179   10 0.0567 0.106 1.28, 1.92 1.07
C57BL/6J m 2.05 0.11   12 0.0319 0.054 1.81, 2.23 1.37
C58/J f 1.58 0.107   10 0.0337 0.0676 1.38, 1.72 0.33
C58/J m 1.7 0.0687   10 0.0217 0.0403 1.57, 1.79 -0.04
FVB/NJ f 1.53 0.157   11 0.0473 0.103 1.16, 1.74 -0.01
FVB/NJ m 1.76 0.0738   9 0.0246 0.0419 1.61, 1.84 0.2
NZB/BlNJ f 1.6 0.0912   11 0.0275 0.0571 1.49, 1.79 0.46
NZB/BlNJ m 1.8 0.122   13 0.0339 0.0681 1.63, 2.01 0.36
PWK/PhJ f 1.3 0.0648   12 0.0187 0.05 1.19, 1.39 -1.55
PWK/PhJ m 1.2 0.174   11 0.0524 0.144 0.9, 1.47 -2.07
SJL/J f 1.66 0.0786   8 0.0278 0.0473 1.55, 1.79 0.87
SJL/J m 1.81 0.0676   11 0.0204 0.0374 1.7, 1.92 0.4
SWR/J f 1.32 0.0692   9 0.0231 0.0525 1.2, 1.42 -1.42
SWR/J m 1.49 0.0406   10 0.0128 0.0272 1.43, 1.57 -0.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.445 0.038 1.52 1.37
129S1/SvImJ m 1.5727 0.0311 1.6339 1.5114
BALB/cJ f 1.725 0.038 1.8 1.65
BALB/cJ m 2.003 0.038 2.078 1.928
C3H/HeJ f 1.4533 0.0401 1.5324 1.3742
C3H/HeJ m 1.7264 0.0363 1.7979 1.6548
C57BL/6J f 1.694 0.038 1.769 1.619
C57BL/6J m 2.0475 0.0347 2.116 1.979
C58/J f 1.577 0.038 1.652 1.502
C58/J m 1.704 0.038 1.779 1.629
FVB/NJ f 1.5291 0.0363 1.6006 1.4575
FVB/NJ m 1.7633 0.0401 1.8424 1.6842
NZB/BlNJ f 1.5973 0.0363 1.6688 1.5257
NZB/BlNJ m 1.7954 0.0334 1.8612 1.7296
PWK/PhJ f 1.2975 0.0347 1.366 1.229
PWK/PhJ m 1.2045 0.0363 1.2761 1.133
SJL/J f 1.66 0.0425 1.7439 1.5761
SJL/J m 1.8091 0.0363 1.8806 1.7375
SWR/J f 1.3189 0.0401 1.398 1.2398
SWR/J m 1.493 0.038 1.568 1.418


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.5088 0.0246 1.5573 1.4604
BALB/cJ both 1.864 0.0269 1.9171 1.8109
C3H/HeJ both 1.5898 0.027 1.6432 1.5365
C57BL/6J both 1.8707 0.0258 1.9216 1.8199
C58/J both 1.6405 0.0269 1.6936 1.5874
FVB/NJ both 1.6462 0.027 1.6995 1.5929
NZB/BlNJ both 1.6963 0.0246 1.7449 1.6477
PWK/PhJ both 1.251 0.0251 1.3006 1.2015
SJL/J both 1.7345 0.028 1.7897 1.6794
SWR/J both 1.4059 0.0276 1.4605 1.3514




  GWAS USING LINEAR MIXED MODELS