Project measure / variable:   Flaherty1   closed1

ID, description, units MPD:11809   closed1   duration in closed quadrants   [s]  q1  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - duration in closed quadrants q1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means200   s 203   s
Median of the strain means203   s 208   s
SD of the strain means± 42.0 ± 43.5
Coefficient of variation (CV)0.210 0.215
Min–max range of strain means150   –   259   s 136   –   261   s
Mean sample size per strain19.9   mice 19.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 569.3321 569.3321 0.1138 0.7361
strain 7 500691.7991 71527.3999 14.2938 < 0.0001
sex:strain 7 7112.1405 1016.0201 0.203 0.9846
Residuals 301 1506225.4865 5004.0714


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 227.0 90.6   20 20.3 0.399 69.8, 300.0 0.63
129S1/SvImJ m 238.0 67.3   20 15.1 0.282 100.0, 299.0 0.81
A/J f 259.0 80.5   20 18.0 0.311 7.1, 300.0 1.4
A/J m 261.0 77.7   20 17.4 0.297 32.1, 300.0 1.34
BALB/cByJ f 235.0 82.6   20 18.5 0.351 0.82
BALB/cByJ m 236.0 85.7   20 19.2 0.364 9.2, 300.0 0.76
C3H/HeJ f 151.0 77.2   20 17.3 0.51 56.8, 280.0 -1.18
C3H/HeJ m 163.0 77.6   19 17.8 0.476 19.3, 300.0 -0.92
C57BL/6J f 173.0 62.2   20 13.9 0.36 76.1, 289.0 -0.65
C57BL/6J m 190.0 51.2   20 11.4 0.27 96.4, 286.0 -0.3
CBA/J f 179.0 82.0   20 18.3 0.459 30.1, 292.0 -0.51
CBA/J m 174.0 68.5   19 15.7 0.394 74.1, 298.0 -0.66
DBA/2J f 229.0 67.9   20 15.2 0.297 101.0, 300.0 0.68
DBA/2J m 225.0 50.6   20 11.3 0.225 121.0, 300.0 0.51
FVB/NJ f 150.0 44.6   19 10.2 0.298 81.6, 250.0 -1.2
FVB/NJ m 136.0 38.5   20 8.61 0.283 40.5, 230.0 -1.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 227.165 15.8178 258.2925 196.0375
129S1/SvImJ m 238.5 15.8178 269.6275 207.3725
A/J f 258.58 15.8178 289.7075 227.4525
A/J m 261.255 15.8178 292.3825 230.1275
BALB/cByJ f 235.1 15.8178 266.2275 203.9725
BALB/cByJ m 235.51 15.8178 266.6375 204.3825
C3H/HeJ f 151.325 15.8178 182.4525 120.1975
C3H/HeJ m 163.0789 16.2287 195.0151 131.1428
C57BL/6J f 173.105 15.8178 204.2325 141.9775
C57BL/6J m 189.57 15.8178 220.6975 158.4425
CBA/J f 178.575 15.8178 209.7025 147.4475
CBA/J m 173.6684 16.2287 205.6046 141.7323
DBA/2J f 228.55 15.8178 259.6775 197.4225
DBA/2J m 225.25 15.8178 256.3775 194.1225
FVB/NJ f 149.7737 16.2287 181.7099 117.8375
FVB/NJ m 135.835 15.8178 166.9625 104.7075


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 232.8325 11.1849 254.843 210.822
A/J both 259.9175 11.1849 281.928 237.907
BALB/cByJ both 235.305 11.1849 257.3155 213.2945
C3H/HeJ both 157.202 11.3311 179.5002 134.9038
C57BL/6J both 181.3375 11.1849 203.348 159.327
CBA/J both 176.1217 11.3311 198.4199 153.8235
DBA/2J both 226.9 11.1849 248.9105 204.8895
FVB/NJ both 142.8043 11.3311 165.1026 120.5061




  GWAS USING LINEAR MIXED MODELS