Project measure / variable:   Flaherty1   beam_breaks

ID, description, units MPD:11807   beam_breaks   number beam breaks in closed quadrants   [n/s]  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - number beam breaks in closed quadrants



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means406   n/s 452   n/s
Median of the strain means386   n/s 440   n/s
SD of the strain means± 97.6 ± 80.3
Coefficient of variation (CV)0.241 0.178
Min–max range of strain means303   –   531   n/s 339   –   595   n/s
Mean sample size per strain19.9   mice 19.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 174871.1874 174871.1874 16.6381 0.0001
strain 7 2012027.7617 287432.5374 27.3477 < 0.0001
sex:strain 7 207337.0553 29619.5793 2.8181 0.0074
Residuals 301 3163602.3237 10510.3067


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 316.0 170.0   20 38.1 0.539 66.0, 645.0 -0.92
129S1/SvImJ m 429.0 111.0   20 24.8 0.259 217.0, 600.0 -0.28
A/J f 375.0 120.0   20 26.8 0.32 183.0, 580.0 -0.31
A/J m 410.0 89.1   20 19.9 0.217 149.0, 552.0 -0.52
BALB/cByJ f 397.0 128.0   20 28.7 0.324 139.0, 634.0 -0.09
BALB/cByJ m 451.0 107.0   20 23.8 0.237 293.0, 654.0 -0.01
C3H/HeJ f 303.0 46.2   20 10.3 0.152 206.0, 397.0 -1.05
C3H/HeJ m 339.0 78.9   19 18.1 0.233 228.0, 481.0 -1.4
C57BL/6J f 531.0 105.0   20 23.4 0.197 249.0, 696.0 1.29
C57BL/6J m 524.0 64.4   20 14.4 0.123 410.0, 620.0 0.9
CBA/J f 524.0 90.6   20 20.3 0.173 356.0, 666.0 1.21
CBA/J m 475.0 106.0   19 24.4 0.224 288.0, 713.0 0.29
DBA/2J f 306.0 67.8   20 15.2 0.222 190.0, 444.0 -1.02
DBA/2J m 389.0 91.9   20 20.5 0.236 217.0, 549.0 -0.78
FVB/NJ f 492.0 113.0   19 26.0 0.23 262.0, 674.0 0.89
FVB/NJ m 595.0 87.9   20 19.6 0.148 372.0, 771.0 1.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 315.7 22.9241 360.8118 270.5882
129S1/SvImJ m 428.6 22.9241 473.7118 383.4882
A/J f 375.3 22.9241 420.4118 330.1882
A/J m 409.85 22.9241 454.9618 364.7382
BALB/cByJ f 396.65 22.9241 441.7618 351.5382
BALB/cByJ m 450.75 22.9241 495.8618 405.6382
C3H/HeJ f 303.25 22.9241 348.3618 258.1382
C3H/HeJ m 338.6842 23.5197 384.968 292.4004
C57BL/6J f 531.45 22.9241 576.5618 486.3382
C57BL/6J m 524.4 22.9241 569.5118 479.2882
CBA/J f 523.7 22.9241 568.8118 478.5882
CBA/J m 475.3684 23.5197 521.6522 429.0846
DBA/2J f 305.95 22.9241 351.0618 260.8382
DBA/2J m 388.8 22.9241 433.9118 343.6882
FVB/NJ f 492.0526 23.5197 538.3364 445.7689
FVB/NJ m 594.55 22.9241 639.6618 549.4382


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 372.15 16.2098 404.0489 340.2511
A/J both 392.575 16.2098 424.4739 360.6761
BALB/cByJ both 423.7 16.2098 455.5989 391.8011
C3H/HeJ both 320.9671 16.4217 353.283 288.6512
C57BL/6J both 527.925 16.2098 559.8239 496.0261
CBA/J both 499.5342 16.4217 531.8501 467.2183
DBA/2J both 347.375 16.2098 379.2739 315.4761
FVB/NJ both 543.3013 16.4217 575.6172 510.9854




  GWAS USING LINEAR MIXED MODELS