Project measure / variable:   Wahlsten1   dist_EPM_min4

ID, description, units MPD:10843   dist_EPM_min4   distance traveled in 1 min   [cm]  during minute 4  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure elevated plus maze
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  STRAIN COMPARISON PLOT
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Wahlsten1 - distance traveled in 1 min during minute 4



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means265   cm 261   cm
Median of the strain means201   cm 211   cm
SD of the strain means± 172 ± 176
Coefficient of variation (CV)0.648 0.676
Min–max range of strain means8.55   –   659   cm 51.6   –   736   cm
Mean sample size per strain8.9   mice 8.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1611.2228 1611.2228 0.0453 0.8315
strain 20 9471178.4992 473558.925 13.3218 < 0.0001
sex:strain 20 745622.3991 37281.12 1.0488 0.404
Residuals 328 11659645.6733 35547.7002


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 457.0 418.0   7 158.0 0.915 182.0, 1352.0 1.12
129S1/SvImJ m 175.0 116.0   10 36.8 0.663 40.4, 373.0 -0.49
A/J f 42.1 52.4   8 18.5 1.24 -1.3
A/J m 51.6 42.1   8 14.9 0.817 2.2, 123.0 -1.19
AKR/J f 219.0 46.1   8 16.3 0.211 150.0, 279.0 -0.27
AKR/J m 178.0 82.2   7 31.1 0.463 53.6, 270.0 -0.47
BALB/cByJ f 142.0 52.1   10 16.5 0.366 53.8, 216.0 -0.72
BALB/cByJ m 250.0 85.9   8 30.4 0.344 142.0, 424.0 -0.06
BTBR T+ Itpr3tf/J f 659.0 475.0   12 137.0 0.72 35.9, 1546.0 2.3
BTBR T+ Itpr3tf/J m 673.0 434.0   5 194.0 0.645 214.0, 1217.0 2.33
C3H/HeJ f 171.0 101.0   8 35.6 0.589 46.4, 324.0 -0.55
C3H/HeJ m 174.0 91.8   8 32.4 0.528 -0.49
C57BL/6J f 554.0 331.0   8 117.0 0.597 228.0, 1214.0 1.69
C57BL/6J m 736.0 479.0   10 151.0 0.65 178.0, 1337.0 2.69
C57L/J f 210.0 44.1   10 13.9 0.21 162.0, 291.0 -0.32
C57L/J m 265.0 60.1   6 24.6 0.227 220.0, 378.0 0.02
C58/J f 515.0 207.0   8 73.3 0.402 282.0, 961.0 1.46
C58/J m 354.0 239.0   10 75.5 0.674 30.0, 718.0 0.53
CAST/EiJ f 176.0 108.0   8 38.0 0.612 26.9, 354.0 -0.52
CAST/EiJ m 152.0 46.2   9 15.4 0.305 81.8, 254.0 -0.62
DBA/2J f 157.0 69.1   8 24.4 0.439 60.2, 257.0 -0.63
DBA/2J m 204.0 86.1   8 30.5 0.421 93.5, 338.0 -0.32
FVB/NJ f 234.0 62.0   10 19.6 0.265 117.0, 340.0 -0.18
FVB/NJ m 266.0 72.4   11 21.8 0.272 115.0, 360.0 0.03
MOLF/EiJ f 201.0 66.5   8 23.5 0.331 80.6, 268.0 -0.37
MOLF/EiJ m 161.0 89.9   7 34.0 0.559 78.2, 346.0 -0.57
NOD/ShiLtJ f 196.0 94.3   12 27.2 0.482 -0.4
NOD/ShiLtJ m 217.0 62.1   12 17.9 0.287 139.0, 317.0 -0.25
NZB/BlNJ f 466.0 374.0   6 153.0 0.803 65.0, 1067.0 1.17
NZB/BlNJ m 494.0 316.0   12 91.3 0.64 130.0, 1136.0 1.32
PERA/EiJ f 198.0 56.5   10 17.9 0.285 121.0, 302.0 -0.39
PERA/EiJ m 160.0 105.0   11 31.6 0.654 22.1, 394.0 -0.57
PL/J f 293.0 134.0   12 38.6 0.456 78.0, 586.0 0.16
PL/J m 318.0 89.1   8 31.5 0.28 170.0, 421.0 0.32
SJL/J f 121.0 87.8   8 31.1 0.728 4.4, 275.0 -0.84
SJL/J m 123.0 98.7   10 31.2 0.8 7.8, 325.0 -0.78
SM/J f 341.0 159.0   14 42.5 0.465 112.0, 645.0 0.44
SM/J m 250.0 112.0   8 39.7 0.449 53.8, 426.0 -0.06
SPRET/EiJ f 8.55 7.1   6 2.9 0.83 2.2, 18.2 -1.49
SPRET/EiJ m 69.5 26.3   2   18.6 0.378 50.9, 88.1 -1.09
SWR/J f 199.0 59.7   9 19.9 0.3 116.0, 277.0 -0.38
SWR/J m 211.0 42.6   10 13.5 0.202 156.0, 294.0 -0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 457.2857 71.2618 597.4735 317.0979
129S1/SvImJ m 175.41 59.6219 292.6995 58.1205
A/J f 42.1125 66.6593 173.2462 0.0
A/J m 51.55 66.6593 182.6837 0.0
AKR/J f 218.625 66.6593 349.7587 87.4913
AKR/J m 177.5143 71.2618 317.7021 37.3265
BALB/cByJ f 142.38 59.6219 259.6695 25.0905
BALB/cByJ m 249.625 66.6593 380.7587 118.4913
BTBR T+ Itpr3tf/J f 659.4083 54.4271 766.4786 552.3381
BTBR T+ Itpr3tf/J m 673.0 84.3181 838.8725 507.1275
C3H/HeJ f 170.9375 66.6593 302.0712 39.8038
C3H/HeJ m 173.875 66.6593 305.0087 42.7413
C57BL/6J f 553.5 66.6593 684.6337 422.3663
C57BL/6J m 736.4 59.6219 853.6895 619.1105
C57L/J f 209.7 59.6219 326.9895 92.4105
C57L/J m 264.6667 76.9715 416.0868 113.2465
C58/J f 514.875 66.6593 646.0087 383.7413
C58/J m 354.37 59.6219 471.6595 237.0805
CAST/EiJ f 175.8 66.6593 306.9337 44.6663
CAST/EiJ m 151.5333 62.847 275.1674 27.8993
DBA/2J f 157.3375 66.6593 288.4712 26.2038
DBA/2J m 204.4375 66.6593 335.5712 73.3038
FVB/NJ f 234.2 59.6219 351.4895 116.9105
FVB/NJ m 266.0 56.8472 377.8312 154.1688
MOLF/EiJ f 201.325 66.6593 332.4587 70.1913
MOLF/EiJ m 160.7429 71.2618 300.9307 20.555
NOD/ShiLtJ f 195.5833 54.4271 302.6536 88.5131
NOD/ShiLtJ m 216.6667 54.4271 323.7369 109.5964
NZB/BlNJ f 465.8333 76.9715 617.2535 314.4132
NZB/BlNJ m 494.1667 54.4271 601.2369 387.0964
PERA/EiJ f 198.1 59.6219 315.3895 80.8105
PERA/EiJ m 160.1364 56.8472 271.9676 48.3052
PL/J f 293.3333 54.4271 400.4036 186.2631
PL/J m 318.0 66.6593 449.1337 186.8663
SJL/J f 120.625 66.6593 251.7587 0.0
SJL/J m 123.34 59.6219 240.6295 6.0505
SM/J f 341.2857 50.3897 440.4135 242.158
SM/J m 249.725 66.6593 380.8587 118.5913
SPRET/EiJ f 8.55 76.9715 159.9702 0.0
SPRET/EiJ m 69.5 133.3186 331.7674 0.0
SWR/J f 199.1111 62.847 322.7451 75.4771
SWR/J m 210.7 59.6219 327.9895 93.4105


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 316.3479 46.457 407.7391 224.9566
A/J both 46.8312 47.1352 139.5568 0.0
AKR/J both 198.0696 48.7896 294.0497 102.0896
BALB/cByJ both 196.0025 44.7164 283.9697 108.0353
BTBR T+ Itpr3tf/J both 666.2042 50.1793 764.918 567.4903
C3H/HeJ both 172.4063 47.1352 265.1318 79.6807
C57BL/6J both 644.95 44.7164 732.9172 556.9828
C57L/J both 237.1833 48.6811 332.9498 141.4168
C58/J both 434.6225 44.7164 522.5897 346.6553
CAST/EiJ both 163.6667 45.8072 253.7797 73.5537
DBA/2J both 180.8875 47.1352 273.613 88.162
FVB/NJ both 250.1 41.1897 331.1294 169.0706
MOLF/EiJ both 181.0339 48.7896 277.014 85.0539
NOD/ShiLtJ both 206.125 38.4858 281.8351 130.4149
NZB/BlNJ both 480.0 47.1352 572.7255 387.2745
PERA/EiJ both 179.1182 41.1897 260.1476 98.0888
PL/J both 305.6667 43.0284 390.3131 221.0202
SJL/J both 121.9825 44.7164 209.9497 34.0153
SM/J both 295.5054 41.7809 377.6978 213.313
SPRET/EiJ both 39.025 76.9715 190.4452 0.0
SWR/J both 204.9056 43.3143 290.1144 119.6967




  GWAS USING LINEAR MIXED MODELS