Gatti2: QTL mapping of neutrophil counts in Diversity Outbred population (2014)

Gatti DM   With: Svenson KL, Shabalin A, Wu L, Valdar W, Simecek P, Goodwin N, Cheng R, Pomp D, Palmer A, Chesler EJ, Broman K, Churchill GA

     
Gatti2 downloads
QTL projects have several available downloads.
Use the QTL Data Downloads button near the bottom of this page.
Participants Daniel M Gatti       The Jackson Laboratory Bar Harbor, ME
With: Svenson KL, Shabalin A, Wu L, Valdar W, Simecek P, Goodwin N, Cheng R, Pomp D, Palmer A, Chesler EJ, Broman K, Churchill GA
ContactDaniel M Gatti     Dan.Gatti@jax.org
AffiliationChurchill Group QTL Archive
AcknowledgementsThis work was supported in part by National Institutes of Health grants P50 GM076468 and R01 GM070683 (to GAC), R01 GM074244 (to KWB) and RC1DK087346, DK076050, DK056350 (to DP).
Project type QTL Archive data set
MPD identifiersGatti2     MPD:289
Data changelog No updates/corrections.       Initial release date: 04/2014.
Mapping of neutrophil counts in whole blood using 742 JAX Diversity Outbred mice (410 female, 332 male). Males (1025 +/- 427, mean +/- s.d.) had higher mean neutrophil counts than females (838 +/- 422). The trait has an estimated heritability of 0.132.


QTL data set parameters:
Progenitor strains CC8 founder strains    
Cross typeDiversity Outbred
Population size 410 ♀     332 ♂
Age10-12wks


Measured phenotypes:       To access these data use the QTL Data Downloads button at bottom of page.
Data set MPD ID Procedure / Protocol Drug or Challenge Phenotype Measure Panel No. of Strains Sex Age Sample Size (Avg)
Gatti2 28901 complete blood count (none) white blood cell counts   [thousands/µL]  WBC QTL population both 10-12wks N=371
Gatti2 28902 complete blood count (none) neutrophil counts   [n/µL]  NEUR QTL population both 10-12wks N=371



Project / data set:   Gatti2     a.k.a. Gatti_2014
Excel file:   Data_Description_Gatti_2014.xlsx
CSV file:   Gatti_2014_geno.csv
CSV file:   Gatti_2014_pheno.csv
Large zipped data set:   Gatti_2014.zip